YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24112510, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24112510, gi|....

Description	E-value	Query Range	Subject Range
gi\|110805119, gi... - gi\|110805119\|ref\|YP_688639.1\| hypothetical protein SFV_1125 [Shigella flexneri 5 str. 8401], gi\|1106...	268.0	[0..2]	[194..1]
gi\|30040884, gi\|... - gi\|30062638\|ref\|NP_836809.1\| hypothetical protein S1189 [Shigella flexneri 2a str. 2457T], gi\|300408...	263.0	[0..2]	[192..1]
gi\|91210260, gi\|... - gi\|91210260\|ref\|YP_540246.1\| fibronectin-binding protein B [Escherichia coli UTI89], gi\|91071834\|gb\|... gi\|4062669, gi\|4... - dbj\|BAA35920.1\| Fibronectin-binding protein B [Escherichia coli K12], dbj\|BAA35912.1\| Fibronectin-b...	261.0	[0..1]	[192..1]
gi\|26107649, gi\|... - gi\|26247248\|ref\|NP_753288.1\| hypothetical protein c1378 [Escherichia coli CFT073], gi\|26107649\|gb\|AA...	260.0	[0..1]	[192..1]
gi\|227886538, gi... - gi\|227886538\|ref\|ZP_04004343.1\| lipoprotein [Escherichia coli 83972], gi\|227836742\|gb\|EEJ47208.1\| li... gi\|238862711, gi... - gi\|238900359\|ref\|YP_002926155.1\| putative outer membrane lipoprotein [Escherichia coli BW2952], gi\|2... gi\|226898119, gi... - gi\|237706909\|ref\|ZP_04537390.1\| fibronectin-binding protein B [Escherichia sp. 3_2_53FAA], gi\|226898... gi\|254288019, gi... - gi\|254288019\|ref\|YP_003053767.1\| predicted outer membrane lipoprotein [Escherichia coli BL21(DE3)], ... gi\|251784635, gi... - gi\|251784635\|ref\|YP_002998939.1\| hypothetical protein B21_01109 [Escherichia coli BL21], gi\|24237690... gi\|254792488, gi... - gi\|254792488\|ref\|YP_003077325.1\| predicted outer membrane lipoprotein [Escherichia coli O157:H7 str.... gi\|253973112, gi... - gi\|254161211\|ref\|YP_003044319.1\| predicted outer membrane lipoprotein [Escherichia coli B str. REL60... gi\|82777282, gi\|... - gi\|82777282\|ref\|YP_403631.1\| hypothetical protein SDY_2045 [Shigella dysenteriae Sd197], gi\|81241430... gi\|189355247, gi... - gi\|189355247\|gb\|EDU73666.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875781... gi\|89107951, gi\|... - gi\|89107951\|ref\|AP_001731.1\| predicted outer membrane lipoprotein [Escherichia coli str. K-12 substr... gi\|168751346, gi... - gi\|188014630\|gb\|EDU52752.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16875134... LPOB_SHISS - Penicillin-binding protein activator LpoB OS=Shigella sonnei (strain Ss046) GN=lpoB PE=3 SV=1 gi\|188999158, gi... - gi\|188999158\|gb\|EDU68144.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16878347... gi\|168776800, gi... - gi\|187767909\|gb\|EDU31753.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|16877680... gi\|189359866, gi... - gi\|189359866\|gb\|EDU78285.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16877133... gi\|168764899, gi... - gi\|189365180\|gb\|EDU83596.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|16876489... gi\|115512414, gi... - gi\|117623290\|ref\|YP_852203.1\| hypothetical protein APECO1_186 [Escherichia coli APEC O1], gi\|1155124... gi\|124529852, gi... - gi\|124529852\|ref\|ZP_01700696.1\| membrane lipoprotein lipid attachment site [Escherichia coli B], gi\|... EG13431 - OM lipoprotein stimulator of MrcB transpeptidase / OM lipoprotein stimulator of MrcB transpeptidase gi\|15830737, gi\|... - gi\|15830737\|ref\|NP_309510.1\| hypothetical protein ECs1483 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110342873, gi... - gi\|110641281\|ref\|YP_669011.1\| hypothetical protein ECP_1097 [Escherichia coli 536], gi\|110342873\|gb\|... YCFM_ECOLI - Hypothetical protein ycfM - Escherichia coli gi\|194433697, gi... - gi\|194433697\|ref\|ZP_03065973.1\| putative lipoprotein [Shigella dysenteriae 1012], gi\|194418126\|gb\|ED... gi\|194412154, gi... - gi\|194429807\|ref\|ZP_03062321.1\| putative lipoprotein [Escherichia coli B171], gi\|194412154\|gb\|EDX284... gi\|193070901, gi... - gi\|193070901\|ref\|ZP_03051832.1\| putative lipoprotein [Escherichia coli E110019], gi\|192955755\|gb\|EDV... gi\|192926070, gi... - gi\|193066298\|ref\|ZP_03047349.1\| putative lipoprotein [Escherichia coli E22], gi\|192926070\|gb\|EDV8071... gi\|208732225, gi... - gi\|208815577\|ref\|ZP_03256756.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|157160632, gi... - gi\|157160632\|ref\|YP_001457950.1\| putative lipoprotein [Escherichia coli HS], gi\|157066312\|gb\|ABV0556... gi\|208807606, gi... - gi\|208807606\|ref\|ZP_03249943.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|157079040, gi... - gi\|157157010\|ref\|YP_001462338.1\| putative lipoprotein [Escherichia coli E24377A], gi\|157079040\|gb\|AB... gi\|195938864 - gi\|195938864\|ref\|ZP_03084246.1\| outer membrane lipoprotein [Escherichia coli O157:H7 str. EC4024] gi\|194421328, gi... - gi\|194439709\|ref\|ZP_03071778.1\| putative lipoprotein [Escherichia coli 101-1], gi\|194421328\|gb\|EDX37... gi\|170080756, gi... - gi\|170080756\|ref\|YP_001730076.1\| outer membrane lipoprotein [Escherichia coli str. K-12 substr. DH10... gi\|170020500, gi... - gi\|170020500\|ref\|YP_001725454.1\| membrane lipoprotein lipid attachment site [Escherichia coli ATCC 8... gi\|168802511, gi... - gi\|189375515\|gb\|EDU93931.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|168802511... gi\|168790083, gi... - gi\|189370389\|gb\|EDU88805.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|168790083... EG13431 - OM lipoprotein stimulator of MrcB transpeptidase / OM lipoprotein stimulator of MrcB transpeptidase gi\|190906616, gi... - gi\|191173071\|ref\|ZP_03034604.1\| putative lipoprotein [Escherichia coli F11], gi\|190906616\|gb\|EDV6622... LPOB_ECO57 - Penicillin-binding protein activator LpoB OS=Escherichia coli O157:H7 GN=lpoB PE=3 SV=1 gi\|190901372, gi... - gi\|191168578\|ref\|ZP_03030362.1\| putative lipoprotein [Escherichia coli B7A], gi\|190901372\|gb\|EDV6113... gi\|188487537, gi... - gi\|188492338\|ref\|ZP_02999608.1\| putative lipoprotein [Escherichia coli 53638], gi\|188487537\|gb\|EDU62... gi\|15801222, gi\|... - gi\|15801222\|ref\|NP_287239.1\| hypothetical protein Z1744 [Escherichia coli O157:H7 EDL933], gi\|125146... gi\|170682321, gi... - gi\|170682321\|ref\|YP_001744073.1\| putative lipoprotein [Escherichia coli SMS-3-5], gi\|170520039\|gb\|AC... gi\|218431613, gi... - gi\|218704516\|ref\|YP_002412035.1\| putative outer membrane lipoprotein [Escherichia coli UMN026], gi\|2... gi\|218700393, gi... - gi\|218700393\|ref\|YP_002408022.1\| putative outer membrane lipoprotein [Escherichia coli IAI39], gi\|21... gi\|218694638, gi... - gi\|218694638\|ref\|YP_002402305.1\| putative outer membrane lipoprotein [Escherichia coli 55989], gi\|21... gi\|215264388, gi... - gi\|215486316\|ref\|YP_002328747.1\| predicted outer membrane lipoprotein [Escherichia coli O127:H6 str.... gi\|209918361, gi... - gi\|209918361\|ref\|YP_002292445.1\| hypothetical protein ECSE_1170 [Escherichia coli SE11], gi\|20991162... gi\|209400489, gi... - gi\|209400489\|ref\|YP_002269950.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|208822753, gi... - gi\|208822753\|ref\|ZP_03263072.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|218689057, gi... - gi\|218689057\|ref\|YP_002397269.1\| putative outer membrane lipoprotein [Escherichia coli ED1a], gi\|218... gi\|218364755, gi... - gi\|218557986\|ref\|YP_002390899.1\| putative outer membrane lipoprotein [Escherichia coli S88], gi\|2183... gi\|218360450, gi... - gi\|218553682\|ref\|YP_002386595.1\| putative outer membrane lipoprotein [Escherichia coli IAI1], gi\|218... gi\|217318901, gi... - gi\|217328474\|ref\|ZP_03444556.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217...	259.0	[0..2]	[192..1]
gi\|82544427, gi\|... - gi\|82544427\|ref\|YP_408374.1\| hypothetical protein SBO_1956 [Shigella boydii Sb227], gi\|81245838\|gb\|A...	258.0	[0..2]	[192..1]
gi\|75175772 - gi\|75175772\|ref\|ZP_00695972.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ...	255.0	[0..5]	[192..1]
gi\|75195288 - gi\|75195288\|ref\|ZP_00705358.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75190162 - gi\|75190162\|ref\|ZP_00703429.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|83584872 - gi\|83584872\|ref\|ZP_00923530.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|83569573 - gi\|83569573\|ref\|ZP_00921025.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75511406 - gi\|75511406\|ref\|ZP_00734089.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75255620 - gi\|75255620\|ref\|ZP_00727399.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75239602 - gi\|75239602\|ref\|ZP_00723569.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75234213 - gi\|75234213\|ref\|ZP_00718606.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75228224 - gi\|75228224\|ref\|ZP_00714883.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ... gi\|75208968 - gi\|75208968\|ref\|ZP_00709238.1\| COG3417: Collagen-binding surface adhesin SpaP (antigen I/II family) ...	254.0	[0..5]	[192..1]
gi\|62179727, gi\|... - gi\|62179727\|ref\|YP_216144.1\| putative outer membrane lipoprotein [Salmonella enterica subsp. enteric... gi\|224468814, gi... - gi\|224584287\|ref\|YP_002638085.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P...	214.0	[0..2]	[192..1]
gi\|206709089, gi... - gi\|207857286\|ref\|YP_002243937.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|238910973 - gi\|238910973\|ref\|ZP_04654810.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Te... LPOB_SALTY - Penicillin-binding protein activator LpoB OS=Salmonella typhimurium GN=lpoB PE=3 SV=1 gi\|198242646, gi... - gi\|198242646\|ref\|YP_002215931.1\| hypothetical protein SeD_A2162 [Salmonella enterica subsp. enterica... gi\|204320339, gi... - gi\|204930880\|ref\|ZP_03221753.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197214281, gi... - gi\|197250578\|ref\|YP_002146835.1\| hypothetical protein SeAg_B1978 [Salmonella enterica subsp. enteric... gi\|197241448, gi... - gi\|197263193\|ref\|ZP_03163267.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=ycfM] [protein=putative outer membrane lipoprotein] [protein_id=YP_005236964.1] [location=1249... gi\|194409718, gi... - gi\|194451414\|ref\|YP_002045206.1\| hypothetical protein SeHA_C1321 [Salmonella enterica subsp. enteric... LPOB_SALTY - Penicillin-binding protein activator LpoB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 70... gi\|194737688, gi... - gi\|194737688\|ref\|YP_002114212.1\| hypothetical protein SeSA_A1283 [Salmonella enterica subsp. enteric... gi\|205336760, gi... - gi\|205336760\|gb\|EDZ23524.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|195630392, gi... - gi\|195630392\|gb\|EDX49018.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167992009, gi... - gi\|205329772\|gb\|EDZ16536.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168239110, gi... - gi\|197288097\|gb\|EDY27484.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167553634, gi... - gi\|205321973\|gb\|EDZ09812.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...	207.0	[0..2]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTKMSRYAL ITALAMFLAG CVGQREPAPV EEVKPAPEQP AEPQQPVPTV PSVPTIPQQP  60
   61 GPIEHEDRTA PPAPHIRHYD WNGAMQPMVS KMLGADGVTA GSVLLVDSVN NRTNGSLNAA 120
  121 EATETLRNAL ANNGKFTLVS AQQLSMLYQQ LCLSPQDSLG TRSTAIVIAL NVGAHYVLYS 180
  181 CASGNVNAPP YKCS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits