YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24051339, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24051339, gi|....

Description	E-value	Query Range	Subject Range
gi\|23306896 - gi\|23306896\|emb\|CAD48417.1\| putative transposase [Escherichia coli]	205.0	[0..1]	[279..112]
gi\|30061786, gi\|... - gi\|30061786\|ref\|NP_835957.1\| IS911 orfA [Shigella flexneri 2a str. 2457T], gi\|30040028\|gb\|AAP15762.1...	196.0	[0..1]	[279..72]
gi\|7960027 - gi\|7960027\|gb\|AAF71187.1\|AF179596_7 putative transposase [Vibrio cholerae]	194.0	[0..1]	[278..29]
gi\|88813740, gi\|... - gi\|88813740\|ref\|ZP_01128962.1\| transposase OrfAB, subunit B [Nitrococcus mobilis Nb-231], gi\|8878900...	194.0	[0..1]	[278..28]
gi\|41057343, gi\|... - gi\|41057343\|ref\|NP_958229.1\| putative transposase OrfB [Enterobacteria phage Sf6], gi\|33334222\|gb\|AA...	193.0	[0..1]	[279..28]
gi\|82524809, gi\|... - gi\|82524809\|ref\|YP_406370.1\| IS911 ORF2 [Shigella boydii Sb227], gi\|82524720\|ref\|YP_406281.1\| IS911 ... gi\|187732506, gi... - gi\|187732506\|ref\|YP_001880905.1\| IS911, transposase orfB [Shigella boydii CDC 3083-94], gi\|187429498...	192.0	[0..1]	[279..1]
gi\|189366760, gi... - gi\|189366760\|gb\|EDU85176.1\| IS911, transposase orfB [Escherichia coli O157:H7 str. EC4501], gi\|16876... gi\|187767916, gi... - gi\|187767916\|gb\|EDU31760.1\| IS911, transposase orfB [Escherichia coli O157:H7 str. EC4196], gi\|16877... gi\|254667464, gi... - gi\|254667464\|ref\|YP_003082150.1\| hypothetical protein ECSP_6016 [Escherichia coli O157:H7 str. TW143... gi\|168783055, gi... - gi\|188999573\|gb\|EDU68559.1\| IS911, transposase orfB [Escherichia coli O157:H7 str. EC4076], gi\|16878... gi\|189375453, gi... - gi\|189375453\|gb\|EDU93869.1\| IS911, transposase orfB [Escherichia coli O157:H7 str. EC508], gi\|168802... gi\|195940105 - gi\|195940105\|ref\|ZP_03085487.1\| putative transposase [Escherichia coli O157:H7 str. EC4024] gi\|217317104, gi... - gi\|217329873\|ref\|ZP_03445948.1\| IS911, transposase orfB [Escherichia coli O157:H7 str. TW14588], gi\|... gi\|110643143, gi... - gi\|110643948\|ref\|YP_671678.1\| putative transposase [Escherichia coli 536], gi\|110643143\|ref\|YP_67087... gi\|188015143, gi... - gi\|188015143\|gb\|EDU53265.1\| integrase core domain [Escherichia coli O157:H7 str. EC4113], gi\|1687507... gi\|168757316, gi... - gi\|189355682\|gb\|EDU74101.1\| IS911, transposase orfB [Escherichia coli O157:H7 str. EC4401], gi\|16875...	192.0	[0..1]	[279..1]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTLCHVFGV HRSSYRYWKN RPEKPDGRRA VLRSQVLELH GISHGSAGAR SIATMATRRG  60
   61 YQMGRWLAGR LMKELGLVSC QQP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 THRYKRGGHE HVAIPNYLER QFAVTEPNQV WCGDVTYIWT GKRWAYLAVV LDLFARKPVG  60
   61 WAMSFSPDSR LTMKALEMAW ETRGKPGGVM FHSEQGSHYT SRQFRQLLWR YQIRQSMSRR 120
  121 GNCWDNSPME RFFRSLKNEW MPVVGYVSFS EAAHAITDYI VGYYSALRPH EYNGGLPPNE 180
  181 SENRYWKNSN SVASFC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.39
Match:	1bcmA
Description:	mu transposase, C-terminal domain; mu transposase, core domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits