YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24111741, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24111741, gi|....

Description	E-value	Query Range	Subject Range
gi\|218547969, gi... - gi\|218547969\|ref\|YP_002381760.1\| conserved hypothetical protein; CPS-53 (KpLE1) prophage [Escherichi... gi\|19549016, gi\|... - gi\|19549016\|ref\|NP_599061.1\| hypothetical protein SfVp29 [Enterobacteria phage SfV], gi\|19483760\|gb\|...	182.0	[0..27]	[125..22]
gi\|75258751 - gi\|75258751\|ref\|ZP_00730141.1\| hypothetical protein EcolE2_01001371 [Escherichia coli E22]	180.0	[0..27]	[125..22]
gi\|83587142 - gi\|83587142\|ref\|ZP_00925771.1\| hypothetical protein Ecol1_01001529 [Escherichia coli 101-1]	176.0	[0..27]	[125..22]
EG14141 - CPS-53 (KpLE1) prophage; uncharacterized protein / Function unknown, CPS-53 /KpLE1 prophage gi\|89109180, gi\|... - gi\|89109180\|ref\|AP_002960.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG14141 - CPS-53 (KpLE1) prophage; uncharacterized protein / Function unknown, CPS-53 /KpLE1 prophage YFDS_ECOLI - Hypothetical protein yfdS - Escherichia coli gi\|170081976, gi... - gi\|170081976\|ref\|YP_001731296.1\| CPS-53 (KpLE1) prophage; hypothetical protein [Escherichia coli str... gi\|218364214, gi... - gi\|218557445\|ref\|YP_002390358.1\| conserved hypothetical protein; CPS-53 (KpLE1) prophage [Escherichi... gi\|238860662, gi... - gi\|238901530\|ref\|YP_002927326.1\| CPS-53 (KpLE1) prophage; hypothetical protein [Escherichia coli BW2...	176.0	[0..27]	[125..22]
gi\|75208111 - gi\|75208111\|ref\|ZP_00708503.1\| hypothetical protein EcolB_01004599 [Escherichia coli B171]	176.0	[0..27]	[125..22]
gi\|91214035, gi\|... - gi\|91214035\|ref\|YP_544021.1\| hypothetical protein UTI89_C5090 [Escherichia coli UTI89], gi\|91075609\|...	175.0	[0..27]	[125..22]
gi\|218368322, gi... - gi\|218561553\|ref\|YP_002394466.1\| conserved hypothetical protein; CPS-53 (KpLE1) prophage [Escherichi... gi\|75236057 - gi\|75236057\|ref\|ZP_00720183.1\| hypothetical protein EcolF_01004377 [Escherichia coli F11] gi\|117626690, gi... - gi\|117626690\|ref\|YP_860013.1\| hypothetical protein APECO1_2049 [Escherichia coli APEC O1], gi\|115515...	175.0	[0..27]	[125..22]
gi\|31983728, gi\|... - gi\|31983728\|ref\|NP_858201.1\| putative protein encoded within IS [Shigella flexneri 2a str. 301], gi\|... gi\|31983728, gi\|... - gi\|31983728\|ref\|NP_858201.1\| putative protein encoded within IS [Shigella flexneri 2a str. 301], gi\|...	79.0	[0..1]	[42..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSETMICQ PEFTDKTLSR KPGAVQKVNE TDAEYLVRKF DELEAKCAAQ ENKVIPVSTE  60
   61 LPPANESVLL FDANGEGWLI GWRSLWYTWG QKETGEWQWT FQVGDLENVN ITHWAVMPKA 120
  121 PEAGA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.687	d.110.4	SNARE-like
View	Download	0.684	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.651	d.110.4	SNARE-like
View	Download	0.646	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.639	d.18.1	ssDNA-binding transcriptional regulator domain
View	Download	0.534	d.110.4	SNARE-like
View	Download	0.526	d.93.1	SH2 domain
View	Download	0.526	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits