YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17982625, gi\|...
Organism:	Brucella melitensis bv. 1 str. 16M
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17982625, gi|....

Description	E-value	Query Range	Subject Range
gi\|17739969, gi\|... - gi\|17935441\|ref\|NP_532231.1\| adenosylcobinamide kinase [Agrobacterium tumefaciens str. C58], gi\|1773... gi\|25322450, gi\|... - pir\|\|AE2766 hypothetical protein cobU [imported] - Agrobacterium tumefaciens (strain C58, Dupont), ...	250.0	[0..1]	[173..1]
gi\|21109520, gi\|... - gi\|21243913\|ref\|NP_643495.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer...	246.0	[0..9]	[173..4]
COBP_PSEDE - Bifunctional adenosylcobalamin biosynthesis protein CobP OS=Pseudomonas denitrificans GN=cobP PE=1 S... gi\|94967 - gi\|94967\|pir\|\|B38164 cobP protein - Pseudomonas sp	244.0	[0..1]	[173..1]
gi\|68346070, gi\|... - gi\|70731771\|ref\|YP_261513.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer...	244.0	[0..7]	[173..2]
gi\|84366837, gi\|... - gi\|84622897\|ref\|YP_450269.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|122879088, gi... - gi\|77760591\|ref\|YP_199989.2\| adenosylcobinamide kinase [Xanthomonas oryzae pv. oryzae KACC10331], gi...	244.0	[0..9]	[173..4]
gi\|82714283, gi\|... - gi\|82738624\|ref\|ZP_00901452.1\| cobinamide kinase [Pseudomonas putida F1], gi\|82714283\|gb\|EAP49369.1\|... gi\|24983166, gi\|... - gi\|26988410\|ref\|NP_743835.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... tr\|I7B398\|I7B398... - Adenosylcobinamide OS=Pseudomonas putida (strain DOT-T1E) GN=cobU PE=4 SV=1	243.0	[0..9]	[173..4]
gi\|78037302, gi\|... - gi\|78048872\|ref\|YP_365047.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer...	243.0	[0..9]	[172..4]
gi\|77361898, gi\|... - gi\|77361898\|ref\|YP_341473.1\| adenosylcobalamin biosynthesis protein [Pseudoalteromonas haloplanktis ...	242.0	[0..3]	[172..1]
gi\|21114277, gi\|... - gi\|21232490\|ref\|NP_638407.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|66767426, gi\|... - gi\|66767426\|ref\|YP_242188.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|188990531, gi... - gi\|188990531\|ref\|YP_001902541.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran...	241.0	[0..9]	[173..4]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSGKSILV LGGARSGKSS YAEKMVEASG LQPLYLATGR AFDTEMESRI AIHRERRGPQ  60
   61 WQTVEEPLDL VTALKAHAAA GRFVLVDCLT LWITNLMMAE RDMAAETVRL VAALPDLAGP 120
  121 VVFVSNEVGL GIVPENRMAR EFRDHAGFLH QAVAAAADEV YFMAAGLPLK MKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.522879
Match:	1c9kA
Description:	Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
cob(I)yrinic acid a,c-diamide adenosyltransferase activity	0.0388346549390599	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: