YRC Public Data Repository - Protein Structure Prediction

Protein:	YM8V_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YM8V_YEAST.

Description	E-value	Query Range	Subject Range
gi\|151946003 - gi\|151946003\|gb\|EDN64235.1\| conserved protein [Saccharomyces cerevisiae YJM789] IBI2 - Protein of unknown function that associates with ribosomes; green fluorescent protein (GFP)-fusion p... YM8V_YEAST - Uncharacterized protein YMR295C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR295C ...	2.0E-93	[1..197]	[1..197]
SPBC19C7.04c - conserved fungal protein YHY4_SCHPO - Uncharacterized protein C19C7.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19C7...	1.0E-21	[49..138]	[12..92]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMHFRKKSSI SNTSDHDGAN RASDVKISED DKARLKMRTA SVADPILDAV QEAQPFEQAA  60
   61 DTFHDNMNRQ SYFSNEEGHV LCDVFGQPIT QADISNPTRA RDERPLDTIR SFEYAVSGDP 120
  121 VWAQQLETPT YGFRVRPDFP VFGAAVTYDA NGMPQQVGGA SSQMYGEQAV YQPQQHVQTE 180
  181 EKQKKKKKGL FGRMKKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits