YRC Public Data Repository - Protein Structure Prediction

Protein:	YM04_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	368 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YM04_YEAST.

Description	E-value	Query Range	Subject Range
YMR114C - Protein of unknown function; may interact with ribosomes, based on co-purification experiments; gree... YM04_YEAST - Putative peptidase YMR114C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR114C PE=1 ...	0.0	[1..368]	[1..368]
gi\|17230686, gi\|... - gi\|17230686\|ref\|NP_487234.1\| hypothetical protein all3194 [Nostoc sp. PCC 7120], gi\|17132289\|dbj\|BAB... gi\|25347072 - pir\|\|AC2205 hypothetical protein all3194 [imported] - Nostoc sp. (strain PCC 7120)	2.0E-73	[1..258]	[1..229]
gi\|221314277 - gi\|221314277\|ref\|ZP_03596082.1\| hypothetical protein BsubsN3_11232 [Bacillus subtilis subsp. subtili... gi\|221319199 - gi\|221319199\|ref\|ZP_03600493.1\| hypothetical protein BsubsJ_11158 [Bacillus subtilis subsp. subtilis... YOQW_BACSU - UPF0361 protein yoqW OS=Bacillus subtilis GN=yoqW PE=3 SV=1 YOQW_BPSPB - Putative SOS response-associated peptidase yoqW OS=Bacillus phage SPbeta GN=yoqW PE=3 SV=1 YOQW_BACSU - Putative SOS response-associated peptidase YoqW OS=Bacillus subtilis (strain 168) GN=yoqW PE=3 SV=1 gi\|221323475 - gi\|221323475\|ref\|ZP_03604769.1\| hypothetical protein BsubsS_11287 [Bacillus subtilis subsp. subtilis...	3.0E-72	[1..249]	[1..222]
gi\|15888401, gi\|... - gi\|17934966\|ref\|NP_531756.1\| hypothetical protein Atu1059 [Agrobacterium tumefaciens str. C58], gi\|1... gi\|25347068, gi\|... - pir\|\|AB2707 conserved hypothetical protein Atu1059 [imported] - Agrobacterium tumefaciens (strain C5...	7.0E-72	[1..271]	[1..251]
gi\|13476468, gi\|... - gi\|14027229\|dbj\|BAB54183.1\| mlr7795 [Mesorhizobium loti MAFF303099], gi\|13476468\|ref\|NP_108038.1\| hy...	1.0E-68	[1..268]	[117..361]
gi\|221314079 - gi\|221314079\|ref\|ZP_03595884.1\| hypothetical protein BsubsN3_10212 [Bacillus subtilis subsp. subtili... gi\|221319001 - gi\|221319001\|ref\|ZP_03600295.1\| hypothetical protein BsubsJ_10128 [Bacillus subtilis subsp. subtilis... YOAM_BACSU - UPF0361 protein yoaM OS=Bacillus subtilis GN=yoaM PE=3 SV=1 gi\|221323275 - gi\|221323275\|ref\|ZP_03604569.1\| hypothetical protein BsubsS_10247 [Bacillus subtilis subsp. subtilis... YOAM_BACSU - Putative SOS response-associated peptidase YoaM OS=Bacillus subtilis (strain 168) GN=yoaM PE=3 SV=1	2.0E-68	[1..249]	[1..222]
gi\|168764446, gi... - gi\|189365576\|gb\|EDU83992.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168771536, gi... - gi\|189359744\|gb\|EDU78163.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|188014152, gi... - gi\|188014152\|gb\|EDU52274.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|254592982, gi... - gi\|254793582\|ref\|YP_003078419.1\| hypothetical protein ECSP_2536 [Escherichia coli O157:H7 str. TW143... gi\|189354899, gi... - gi\|189354899\|gb\|EDU73318.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|209766918, gi... - pir\|\|F85810 hypothetical protein yedK [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12516032, gi\|... - gi\|15802366\|ref\|NP_288392.1\| hypothetical protein Z3021 [Escherichia coli O157:H7 EDL933], gi\|125160... gi\|209159729, gi... - gi\|209398329\|ref\|YP_002271046.1\| hypothetical protein ECH74115_2706 [Escherichia coli O157:H7 str. E... gi\|217318325, gi... - gi\|217328978\|ref\|ZP_03445059.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|208730966, gi... - gi\|208816623\|ref\|ZP_03257743.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208741420, gi... - gi\|208821297\|ref\|ZP_03261617.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|195939236 - gi\|195939236\|ref\|ZP_03084618.1\| hypothetical protein EscherichcoliO157_22918 [Escherichia coli O157:... gi\|208725071, gi... - gi\|208810555\|ref\|ZP_03252431.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|189370218, gi... - gi\|189370218\|gb\|EDU88634.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189375699, gi... - gi\|189375699\|gb\|EDU94115.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|187767399, gi... - gi\|187767399\|gb\|EDU31243.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168783326, gi... - gi\|188999265\|gb\|EDU68251.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g...	4.0E-64	[1..251]	[1..222]
gi\|15831924, gi\|... - gi\|15831924\|ref\|NP_310697.1\| hypothetical protein ECs2670 [Escherichia coli O157:H7], gi\|13362138\|db... gi\|25347059 - pir\|\|F90962 hypothetical protein ECs2670 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|15831924, gi\|... - gi\|15831924\|ref\|NP_310697.1\| hypothetical protein ECs2670 [Escherichia coli O157:H7 str. Sakai], gi\|...	6.0E-64	[1..251]	[1..222]
gi\|2822350, gi\|1... - gi\|2822350\|gb\|AAC82856.1\| unknown [Halobacterium sp. NRC-1], gi\|16120057\|ref\|NP_395645.1\| hypothetic... gi\|7484056 - pir\|\|T08289 conserved hypothetical protein H0801 - Halobacterium sp. (strain NRC-1) plasmid pNRC100	9.0E-64	[1..258]	[10..232]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGRFALAYD SGDLPQLLRD WNLPVNTPKD ASSNSQHPHD EEDTKDQPTV SKDIFKASYN  60
   61 ISPTNYSAVY RPDTKAIQFM RWGLVPFWTK DVSQFKTYRT FNARLENLQE SKMWMRPCEK 120
  121 KRCAVLMSGY FEWKTVGKKK TPYFISRRDG RLMFVAGMYD YVEKDDLYTF TIITAQGPRE 180
  181 LEWLHERMPC VLEPGTESWD AWMDVDKTTW STEELVKLLK PDYDESKLQF YQVTDDVGKT 240
  241 TNTGERLIKP LLKE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	183.387216
Match:	PF02586
Description:	Uncharacterised ACR, COG2135

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [255-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSDMFSVKRE KEEALLENDN EQGIDNRGVK GDKSLKGEDV FNQKKSLKRN SYDGLKKNEE  60
   61 QEETTLPEEG SIGDRVKREE ANLSPKREGN REKRNIVNML GNQKDSRGKK KIKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits