YRC Public Data Repository - Protein Structure Prediction

Protein:	YCH5_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCH5_YEAST.

Description	E-value	Query Range	Subject Range
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	8.0E-31	[8..145]	[145..289]
YCH5_YEAST - Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... YCL075W - Pseudogene: encodes fragment of Ty Pol protein gi\|151943924 - gi\|151943924\|gb\|EDN62221.1\| hypothetical protein SCY_0515 [Saccharomyces cerevisiae YJM789]	1.0E-28	[1..146]	[1..146]
gi\|8778361, gi\|2... - gi\|8778361\|gb\|AAF79369.1\|AC007887_28 F15O4.39 [Arabidopsis thaliana], pir\|\|F86476 protein F15O4.39 [...	2.0E-28	[6..146]	[183..336]
gi\|31432803, gi\|... - gi\|37535602\|ref\|NP_922103.1\| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)], ...	4.0E-27	[16..145]	[341..476]

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Predicted Domain #1

Region A:
Residues: [1-53]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYIIYGADHR ISNCSLLKRR IPEARIFKLY PNDKTSRSSS ASVAIPDYET QGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	2.09691
Match:	1a6bB_
Description:	Zinc finger protein ncp10
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [54-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAGQITPKSW LCMLSSTVPA TKSSEWIFDT GCTSHMCHDR SIFSSFTRSS RKDFVRGVGG  60
   61 SIPIMGSGTV NIGTVQLHDV SYVPDLPVNL ISV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits