YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAK_HAEIN
Organism:	Haemophilus influenzae Rd KW20
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAK_HAEIN.

Description	E-value	Query Range	Subject Range
gi\|190150541, gi... - gi\|190150541\|ref\|YP_001969066.1\| hypothetical protein APP7_1272 [Actinobacillus pleuropneumoniae ser... gi\|32035604 - gi\|32035604\|ref\|ZP_00135525.1\| COG2606: Uncharacterized conserved protein [Actinobacillus pleuropneu... gi\|126208689, gi... - gi\|126208689\|ref\|YP_001053914.1\| hypothetical protein APL_1221 [Actinobacillus pleuropneumoniae L20]...	175.0	[0..1]	[158..1]
gi\|145638952, gi... - gi\|145638952\|ref\|ZP_01794560.1\| tRNA pseudouridine synthase C [Haemophilus influenzae PittII], gi\|14... gi\|144978300, gi... - gi\|145629457\|ref\|ZP_01785255.1\| tRNA pseudouridine synthase C [Haemophilus influenzae 22.1-21], gi\|1... gi\|42631733 - gi\|42631733\|ref\|ZP_00157271.1\| COG2606: Uncharacterized conserved protein [Haemophilus influenzae R2...	170.0	[0..1]	[158..1]
gi\|1074777 - pir\|\|H64171 hypothetical protein HI1434 - Haemophilus influenzae (strain Rd KW20) gi\|1574272, gi\|1... - gi\|16273339\|ref\|NP_439583.1\| hypothetical protein HI1434 [Haemophilus influenzae Rd KW20], gi\|157427...	168.0	[0..1]	[158..1]
gi\|9257097, gi\|9... - gi\|9257098\|pdb\|1DBX\|B Chain B, Crystal Structure Of Cysteinyl-Trna(Pro) Deacylase From H. Influenzae...	167.0	[0..1]	[158..1]
gi\|75257874, gi\|... - gi\|75257874\|ref\|ZP_00729352.1\| COG2606: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|75514604, gi\|... - gi\|75514604\|ref\|ZP_00736859.1\| COG2606: Uncharacterized conserved protein [Escherichia coli 53638], ... gi\|85674620, gi\|... - gi\|89107350\|ref\|AP_001130.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|169756059, gi... - gi\|170021131\|ref\|YP_001726085.1\| hypothetical protein EcolC_3135 [Escherichia coli ATCC 8739], gi\|16... YBAK_ECOLI - Protein ybaK - Escherichia coli gi\|215263633, gi... - gi\|215485561\|ref\|YP_002327992.1\| hypothetical protein E2348C_0416 [Escherichia coli O127:H6 str. E23... gi\|170080066, gi... - gi\|170080066\|ref\|YP_001729386.1\| bifunctional cys-tRNA Pro deacetylase and cys-tRNA Cys deacylase [E... gi\|83570185, gi\|... - gi\|83570185\|ref\|ZP_00921631.1\| COG2606: Uncharacterized conserved protein [Shigella dysenteriae 1012... gi\|194423583, gi... - gi\|83587064\|ref\|ZP_00925694.1\| COG2606: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|110614054, gi... - gi\|110804506\|ref\|YP_688026.1\| hypothetical protein SFV_0454 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|157158258, gi... - gi\|75189549\|ref\|ZP_00702816.1\| COG2606: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|157160008, gi... - gi\|75194701\|ref\|ZP_00704771.1\| COG2606: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|75209763, gi\|... - gi\|75209763\|ref\|ZP_00709965.1\| COG2606: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|190902450, gi... - gi\|75229358\|ref\|ZP_00715913.1\| COG2606: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|193067716, gi... - gi\|75239023\|ref\|ZP_00723005.1\| COG2606: Uncharacterized conserved protein [Escherichia coli E110019]... EG12454 - Cys-tRNA(Pro) /Cys-tRNA(Cys) deacylase / Cys-tRNA(Pro) /Cys-tRNA(Cys) deacylase, tRNA editing gi\|218350675, gi... - gi\|218693943\|ref\|YP_002401610.1\| hypothetical protein EC55989_0494 [Escherichia coli 55989], gi\|2183... gi\|218553047, gi... - gi\|218553047\|ref\|YP_002385960.1\| hypothetical protein ECIAI1_0484 [Escherichia coli IAI1], gi\|218359... gi\|218703764, gi... - gi\|218703764\|ref\|YP_002411283.1\| hypothetical protein ECUMN_0520 [Escherichia coli UMN026], gi\|21843... EG12454 - Cys-tRNA(Pro) /Cys-tRNA(Cys) deacylase / Cys-tRNA(Pro) /Cys-tRNA(Cys) deacylase, tRNA editing gi\|238899768, gi... - gi\|238899768\|ref\|YP_002925564.1\| hypothetical protein BWG_0362 [Escherichia coli BW2952], gi\|2388602... gi\|242376262, gi... - gi\|251783989\|ref\|YP_002998293.1\| hypothetical protein B21_00437 [Escherichia coli BL21], gi\|24237626... gi\|254287354, gi... - gi\|254287354\|ref\|YP_003053102.1\| hypothetical protein ECD_00432 [Escherichia coli BL21(DE3)], gi\|253... gi\|253972451, gi... - gi\|254160550\|ref\|YP_003043658.1\| hypothetical protein ECB_00432 [Escherichia coli B str. REL606], gi... gi\|24050660, gi\|... - gi\|24111864\|ref\|NP_706374.1\| hypothetical protein SF0426 [Shigella flexneri 2a str. 301], gi\|2405066... gi\|30061981, gi\|... - gi\|30061981\|ref\|NP_836152.1\| hypothetical protein S0433 [Shigella flexneri 2a str. 2457T], gi\|300402... gi\|124499292, gi... - gi\|124530267\|ref\|ZP_01700986.1\| ybaK/ebsC protein [Escherichia coli B], gi\|124499292\|gb\|EAY46783.1\| ... YBAK_SHIFL - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK OS=Shigella flexneri GN=ybaK PE=3 SV=1	164.0	[0..1]	[157..1]
gi\|209910956, gi... - gi\|209917697\|ref\|YP_002291781.1\| hypothetical protein ECSE_0506 [Escherichia coli SE11], gi\|20991095... gi\|73854539, gi\|... - gi\|74311062\|ref\|YP_309481.1\| hypothetical protein SSON_0470 [Shigella sonnei Ss046], gi\|73854539\|gb\|... gi\|81239937, gi\|... - gi\|82775789\|ref\|YP_402136.1\| hypothetical protein SDY_0437 [Shigella dysenteriae Sd197], gi\|81239937... gi\|187427500, gi... - gi\|75177572\|ref\|ZP_00697653.1\| COG2606: Uncharacterized conserved protein [Shigella boydii BS512], g... gi\|81244386, gi\|... - gi\|82542975\|ref\|YP_406922.1\| hypothetical protein SBO_0383 [Shigella boydii Sb227], gi\|81244386\|gb\|A...	164.0	[0..1]	[157..1]
gi\|117622740, gi... - gi\|117622740\|ref\|YP_851653.1\| hypothetical protein APECO1_1532 [Escherichia coli APEC O1], gi\|115511... gi\|227884506, gi... - gi\|227884506\|ref\|ZP_04002311.1\| transcriptional regulator [Escherichia coli 83972], gi\|227838592\|gb\|... gi\|237707519, gi... - gi\|237707519\|ref\|ZP_04538000.1\| ybaK [Escherichia sp. 3_2_53FAA], gi\|226898729\|gb\|EEH84988.1\| ybaK [... gi\|26106894, gi\|... - gi\|26246496\|ref\|NP_752535.1\| hypothetical protein c0601 [Escherichia coli CFT073], gi\|26106894\|gb\|AA... gi\|110342336, gi... - gi\|110640744\|ref\|YP_668472.1\| hypothetical protein ECP_0544 [Escherichia coli 536], gi\|110342336\|gb\|... gi\|190906048, gi... - gi\|75238235\|ref\|ZP_00722236.1\| COG2606: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|218425909, gi... - gi\|218688345\|ref\|YP_002396557.1\| hypothetical protein ECED1_0505 [Escherichia coli ED1a], gi\|2184259... gi\|218557393, gi... - gi\|218557393\|ref\|YP_002390306.1\| hypothetical protein ECS88_0480 [Escherichia coli S88], gi\|21836416... gi\|91209557, gi\|... - gi\|91209557\|ref\|YP_539543.1\| hypothetical protein UTI89_C0511 [Escherichia coli UTI89], gi\|91071131\|...	164.0	[0..1]	[157..1]
gi\|77811968, gi\|... - gi\|77813133\|ref\|ZP_00812414.1\| Conserved hypothetical protein 11 [Shewanella putrefaciens CN-32], gi... gi\|82741980, gi\|... - gi\|82741980\|ref\|ZP_00904687.1\| Conserved hypothetical protein 11 [Shewanella sp. W3-18-1], gi\|827206... gi\|124510239, gi... - gi\|124546287\|ref\|ZP_01705392.1\| ybaK/ebsC protein [Shewanella putrefaciens 200], gi\|124510239\|gb\|EAY...	163.0	[0..1]	[155..1]
gi\|208815780, gi... - gi\|208815780\|ref\|ZP_03256959.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4045], gi\|2087324... gi\|208728463, gi... - gi\|208808662\|ref\|ZP_03250999.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4206], gi\|2087284... gi\|195936044 - gi\|195936044\|ref\|ZP_03081426.1\| hypothetical protein EscherichcoliO157_06191 [Escherichia coli O157:... gi\|168798047, gi... - gi\|189379247\|gb\|EDU97663.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC508], gi\|168798047\|re... gi\|217320468, gi... - gi\|217324247\|ref\|ZP_03440331.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. TW14588], gi\|217320... gi\|15829788, gi\|... - gi\|15829788\|ref\|NP_308561.1\| hypothetical protein ECs0534 [Escherichia coli O157:H7], gi\|13359991\|db... gi\|209160846, gi... - gi\|209399446\|ref\|YP_002269132.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4115], gi\|209160... gi\|209778278, gi... - pir\|\|B85546 hypothetical protein ybaK [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15829788, gi\|... - gi\|15829788\|ref\|NP_308561.1\| hypothetical protein ECs0534 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208737135, gi... - gi\|208822942\|ref\|ZP_03263260.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4042], gi\|2087371... gi\|189369048, gi... - gi\|189369048\|gb\|EDU87464.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4501], gi\|168760362\|r... gi\|15800210, gi\|... - gi\|15800210\|ref\|NP_286222.1\| hypothetical protein Z0600 [Escherichia coli O157:H7 EDL933], gi\|125133... gi\|189357971, gi... - gi\|189357971\|gb\|EDU76390.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4401], gi\|168754588\|r... gi\|188017730, gi... - gi\|188017730\|gb\|EDU55852.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4113], gi\|168747841\|r... gi\|254791664, gi... - gi\|254791664\|ref\|YP_003076501.1\| bifunctional cys-tRNA Pro deacetylase/cys-tRNA Cys deacylase [Esche... gi\|168786335, gi... - gi\|189373496\|gb\|EDU91912.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC869], gi\|168786335\|re... gi\|168778977, gi... - gi\|189003013\|gb\|EDU71999.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4076], gi\|168778977\|r... gi\|187769682, gi... - gi\|187769682\|gb\|EDU33526.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4196], gi\|168774550\|r... gi\|189362478, gi... - gi\|189362478\|gb\|EDU80897.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4486], gi\|168768438\|r...	162.0	[0..1]	[157..1]
SO1124 - conserved hypothetical protein TIGR00011 gi\|24372707, gi\|... - gi\|24372707\|ref\|NP_716749.1\| hypothetical protein SO_1124 [Shewanella oneidensis MR-1], gi\|24346765\|...	162.0	[0..1]	[155..1]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPAIDLLKK QKIPFILHTY DHDPNNQHFG DEAAEKLGID PNRSFKTLLV AENGDQKKLA  60
   61 CFVLATANML NLKKAAKSIG VKKVEMADKD AAQKSTGYLV GGISPLGQKK RVKTVINSTA 120
  121 LEFETIYVSG GKRGLSVEIA PQDLAKVLGA EFTDIVDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	1dbuA
Description:	Hypothetical protein HI1434 (YbaK homologue)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits