YRC Public Data Repository - Protein Structure Prediction

Protein:	Y3206_RHILO
Organism:	Mesorhizobium loti MAFF303099
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y3206_RHILO.

Description	E-value	Query Range	Subject Range
Y064_MYCVP - UPF0310 protein Mvan_0064 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_0064 PE=3 S...	220.0	[0..2]	[148..1]
gi\|119692210, gi... - gi\|92915059\|ref\|ZP_01283684.1\| Protein of unknown function DUF55 [Mycobacterium sp. KMS], gi\|9244085... gi\|92433788, gi\|... - gi\|92909326\|ref\|ZP_01278104.1\| Protein of unknown function DUF55 [Mycobacterium sp. JLS], gi\|9243378... gi\|108797036, gi... - gi\|108797036\|ref\|YP_637233.1\| hypothetical protein Mmcs_0055 [Mycobacterium sp. MCS], gi\|108767455\|g...	207.0	[0..2]	[148..1]
gi\|111611605, gi... - gi\|121611137\|ref\|YP_998944.1\| hypothetical protein Veis_4221 [Verminephrobacter eiseniae EF01-2], gi...	204.0	[0..1]	[138..3]
gi\|86356484, gi\|... - gi\|86356484\|ref\|YP_468376.1\| hypothetical protein RHE_CH00838 [Rhizobium etli CFN 42], gi\|86280586\|g...	201.0	[0..1]	[145..1]
Y785_MYCGI - UPF0310 protein Mflv_0785 OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_0785 PE=3 SV=1	200.0	[0..2]	[138..1]
gi\|54295949, gi\|... - gi\|54295949\|ref\|YP_122261.1\| hypothetical protein plpp0106 [Legionella pneumophila str. Paris], gi\|5...	184.0	[0..1]	[140..1]
YOUG_BACLI - UPF0310 protein in gntR 5'region OS=Bacillus licheniformis GN=oug PE=3 SV=1	184.0	[0..9]	[139..17]
gi\|88604025, gi\|... - gi\|88604025\|ref\|YP_504203.1\| hypothetical protein Mhun_2790 [Methanospirillum hungatei JF-1], gi\|881...	183.0	[0..2]	[139..13]
Y875_PYRAB - UPF0310 protein PYRAB08750 OS=Pyrococcus abyssi GN=PYRAB08750 PE=3 SV=1 Y875_PYRAB - UPF0310 protein PYRAB08750 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB08750 PE=3 SV=1	183.0	[0..2]	[136..1]

Back

Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAYWIAVAS AQHVRRGRND GFMQVNHGKA APLRRVKPGD GIVYYSPTTI LGEKDGLQAF  60
   61 TAIGTVRYGK ESPYQGEMGG GFTPFRRDVE WAVAEEAPIK PLLDRLDFTA GKSNWGYHLR 120
  121 FGLFEITDHD FRLIAEAMGA PKTLAEATA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	1wmmA
Description:	Crystal structure of PH1033 from Pyrococcus horikoshii Ot3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits