YRC Public Data Repository - Protein Structure Prediction

Protein:	Y206_LISMC
Organism:	Listeria monocytogenes serotype 4b str. CLIP 80459
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y206_LISMC.

Description	E-value	Query Range	Subject Range
gi\|18073211 - gi\|18073211\|emb\|CAC80661.1\| hypothetical protein (conserved) [Listeria ivanovii]	154.0	[0..1]	[110..11]
gi\|118723107, gi... - gi\|18073203\|emb\|CAC80654.1\| hypothetical protein (conserved) [Listeria innocua], gi\|118723123\|gb\|ABL...	154.0	[0..1]	[110..11]
gi\|45602891, gi\|... - gi\|45602898\|gb\|AAS72334.1\| hypothetical protein [Listeria seeligeri], gi\|45602891\|gb\|AAS72328.1\| hyp...	152.0	[0..1]	[110..1]
gi\|254913925, gi... - gi\|254913925\|ref\|ZP_05263937.1\| hypothetical protein LmonJ2_14053 [Listeria monocytogenes J2818], gi... gi\|126941309, gi... - gi\|254901007\|ref\|ZP_05260931.1\| hypothetical protein LmonJ_14373 [Listeria monocytogenes J0161], gi\|... gi\|254938284, gi... - gi\|254938284\|ref\|ZP_05269981.1\| hypothetical protein LmonF6_14201 [Listeria monocytogenes F6900], gi... gi\|47096201, gi\|... - gi\|47096201\|ref\|ZP_00233800.1\| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F685...	151.0	[0..1]	[110..1]
Y170_LISW6 - UPF0145 protein lwe0170 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)... Y208_LISWE - UPF0145 protein OS=Listeria welshimeri PE=3 SV=1	149.0	[0..1]	[110..1]
gi\|37200483, gi\|... - gi\|37675943\|ref\|NP_936339.1\| hypothetical protein VVA0283 [Vibrio vulnificus YJ016], gi\|37200483\|dbj...	148.0	[0..1]	[106..16]
Y734_NITMU - UPF0145 protein Nmul_A0734 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A07...	148.0	[0..1]	[106..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVTTSPNIE GKQIIEYKKI VFGEVITGVN FMKDIGAGLR NFFGGRSQGY EDELINAREE  60
   61 AIREMEQRAK DIGANAVIGV DIDYEVLGAD NGMLMVTASG TAVVIEAQDY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	1y2iA
Description:	Crystal Structure of MCSG Target APC27401 from Shigella flexneri
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits