YRC Public Data Repository - Protein Structure Prediction

Protein:	VEL1_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VEL1_YEAST.

Description	E-value	Query Range	Subject Range
VEL1 - Protein of unknown function; highly induced in zinc-depleted conditions and has increased expression... VEL1_YEAST - Protein VEL1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VEL1 PE=1 SV=1	0.0	[1..206]	[1..206]
SPBPB2B2.15, SPB... - conserved fungal protein, conserved fungal protein YHEF_SCHPO - VEL1-related protein BPB2B2.15/BC1348.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=...	2.0E-91	[6..206]	[6..203]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLSIFTFF SVLISVATTV RFDLTNVTCK GLHGPHCGTY VMEVVGQNGT FLGQSTFVGA  60
   61 DVLTESAGDA WARYLGQETR FLPKLTTIAS NETKNFSPLI FTTNINTCNP QSIGDAMVPF 120
  121 ANTVTGEIEY NSWADTADNA SFITGLANQL FNSTDYGVQV ASCYPNFASV ILSTPAVNIF 180
  181 GKDDTLPDYC TAIQLKAVCP PEAGFD

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Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits