YRC Public Data Repository - Protein Structure Prediction

Protein:	TAF14_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF14_YEAST.

Description	E-value	Query Range	Subject Range
gi\|1256510 - gi\|1256510\|emb\|CAA49192.1\| unnamed protein product [Saccharomyces cerevisiae]	334.0	[0..10]	[244..1]
gi\|50294109, gi\|... - gi\|50294109\|ref\|XP_449466.1\| hypothetical protein CAGL0M02739g [Candida glabrata CBS138], gi\|4952878... gi\|49528780 - gi\|49528780\|emb\|CAG62442.1\| unnamed protein product [Candida glabrata]	303.0	[0..1]	[244..1]
gi\|44981540 - gi\|44981540\|gb\|AAS51325.1\| ACR099Cp [Ashbya gossypii ATCC 10895] gi\|44981540, gi\|... - gi\|45185785\|ref\|NP_983501.1\| ACR099Cp [Ashbya gossypii ATCC 10895], gi\|44981540\|gb\|AAS51325.1\| ACR09...	302.0	[0..1]	[244..1]
gi\|85081360 - gi\|85081360\|ref\|XP_956708.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28917782, gi\|... - gi\|32403834\|ref\|XP_322530.1\| hypothetical protein [Neurospora crassa], gi\|28917782\|gb\|EAA27472.1\| hy...	290.0	[0..12]	[241..94]
gi\|40882136 - gi\|40882136\|emb\|CAF05963.1\| related to transcription initiation factor IIF 30K chain [Neurospora cra...	290.0	[0..5]	[241..3]
gi\|49642499\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50306779, gi\|... - gi\|50306779\|ref\|XP_453365.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642499\|emb\|CAH0046...	289.0	[0..1]	[244..1]
TAF14_SCHPO - Transcription initiation factor TFIID subunit 14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... tfg3 - transcription factor TFIIF complex subunit Tfg3	282.0	[0..2]	[241..1]
gi\|116207650, gi... - gi\|88183715\|gb\|EAQ91183.1\| hypothetical protein CHGG_03118 [Chaetomium globosum CBS 148.51], gi\|1162...	242.0	[0..5]	[241..64]
gi\|67515603, gi\|... - gi\|67515603\|ref\|XP_657687.1\| hypothetical protein AN0083.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	239.0	[0..2]	[238..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVATVKRTIR IKTQQHILPE VPPVENFPVR QWSIEIVLLD DEGKEIPATI FDKVIYHLHP  60
   61 TFANPNRTFT DPPFRIEEQG WGGFPLDISV FLLEKAGERK IPHDLNFLQE SYEVEHVIQI 120
  121 PLNKPLLTEE LAKSGSTEET TANTGTIGKR RTTT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	57.60206
Match:	PF03366
Description:	YEATS family

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.557	N/A	N/A	b.60.1	Lipocalins
View	Download	0.534	N/A	N/A	d.81.2	Description not found.
View	Download	0.370	N/A	N/A	d.190.1	Chorismate lyase
View	Download	0.350	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.348	N/A	N/A	b.64.1	Mannose 6-phosphate receptor domain
View	Download	0.331	N/A	N/A	b.60.1	Lipocalins
View	Download	0.331	N/A	N/A	b.60.1	Lipocalins
View	Download	0.328	N/A	N/A	d.24.1	Pili subunits
View	Download	0.217	N/A	N/A	b.1.8	Cu,Zn superoxide dismutase-like

Predicted Domain #2

Region A:
Residues: [155-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTTAEPKAKR AKTGSASTVK GSVDLEKLAF GLTKLNEDDL VGVVQMVTDN KTPEMNVTNN  60
   61 VEEGEFIIDL YSLPEGLLKS LWDYVKKNTE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.687	a.77.1	DEATH domain
View	Download	0.687	a.77.1	DEATH domain
View	Download	0.636	d.58.36	Sulfite reductase, domains 1 and 3
View	Download	0.621	a.77.1	DEATH domain
View	Download	0.621	a.77.1	DEATH domain
View	Download	0.593	a.77.1	DEATH domain
View	Download	0.593	a.77.1	DEATH domain
View	Download	0.578	a.280.1	Description not found.
View	Download	0.509	d.58.7	RNA-binding domain, RBD
View	Download	0.486	a.77.1	DEATH domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits