YRC Public Data Repository - Protein Structure Prediction

Protein:	SNX41_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	625 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNX41_YEAST.

Description	E-value	Query Range	Subject Range
SNX41 - Sorting nexin, involved in the retrieval of late-Golgi SNAREs from the post-Golgi endosome to the tr... SNX41_YEAST - Sorting nexin-41 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNX41 PE=1 SV=1	8.0E-78	[1..625]	[1..625]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	5.0E-42	[63..613]	[1559..2126]
gi\|20455497 - gi\|20455497\|sp\|P05661\|MYSA_DROME Myosin heavy chain, muscle	6.0E-42	[63..613]	[1559..2126]
SNX18 - sorting nexin 18	4.0E-41	[3..387]	[141..542]
gi\|12248793 - gi\|12248793\|dbj\|BAB20283.1\| sorting nexin 1 [Mus musculus]	7.0E-41	[20..548]	[9..520]
SNX1_RAT - Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 SV=1	3.0E-40	[20..548]	[9..521]
MYSS_CYPCA - Myosin heavy chain, fast skeletal muscle OS=Cyprinus carpio PE=2 SV=2	5.0E-40	[77..597]	[1099..1652]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYNIFEAVH EQQSSTSDMD LSEEDNNPFV GTHHLYASGI GTTIGEARPE NENSPPSSSS  60
   61 LPSSPAHSSS AGSSRASTSS STSSHAVVEA DAETEPFVSL SMSTTATISK FTPHDMNGTQ 120
  121 QIQII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.522879
Match:	1almA_
Description:	No description for 1almA_ was found.

Predicted Domain #2

Region A:
Residues: [126-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAGDFKDPWG KHAIGYVILY ENNKIIRRYS EFHSLRQSLT RLLPTIIIPP IPSKHSLLKY  60
   61 IWSPINAAND SKIISTRKKM LNSFLSNCLN IQEISNDIVF QKFLNPEFNW KDVLSSSPII 120
  121 ILPLNNLLAP PLSPTKPSPL HSILPIPSNS SLRNYNSIWQ QHITVKSHNE ISNLPTEILQ 180
  181 NESQFTHIEN LFQNYKRIIT HLLKNIRSNK SHFHSLSTYF AELGAYYNAF SLENDITMPN 240
  241 SLRESENNSN NPMMEIISHI EKTGHSFDVI YISSEILIEK YTSILEDPIN ELLQFLNESF 300
  301 KVLNFKKLKF LQFKILERLI IEKETKLSSL TEIENQLQKI N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [467-625]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESLTRSTILT DENYKDTKAA DLTFVKKDVR SLSKSSSNSS SSGHQNEIHI GASKLNYKTS  60
   61 TPTMNLNKLE IKQLTEQERS KQIKQLNQDL SKLKDCLSIC ISDMLEINNS SYNSLMHTYN 120
  121 HINLTIGKIL KLFAASFKAW IKECLKNWKL AKLQIDEAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	2.154902
Match:	1c1gA_
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits