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View Structure Prediction Details

Protein: SDS3_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 327 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDS3_YEAST.

Description E-value Query
Range
Subject
Range
SDS3 - Component of the Rpd3p/Sin3p deacetylase complex required for its structural integrity and catalytic...
SDS3_YEAST - Transcriptional regulatory protein SDS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...
0.0 [1..327] [1..327]
gi|553596 - gi|553596|gb|AAA59888.1| cellular myosin heavy chain [Homo sapiens]
1.0E-32 [8..195] [1033..1232]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
5.0E-32 [11..140] [2..131]
MYH9_RAT - Myosin-9 OS=Rattus norvegicus GN=Myh9 PE=1 SV=3
3.0E-26 [8..195] [1033..1232]
MYH9_CHICK - Myosin-9 OS=Gallus gallus GN=MYH9 PE=2 SV=1
5.0E-26 [8..195] [1033..1232]
gi|9759454 - gi|9759454|dbj|BAB10370.1| unnamed protein product [Arabidopsis thaliana]
9.0E-26 [10..174] [453..625]
MYH9_MOUSE - Myosin-9 - Mus musculus (Mouse)
2.0E-25 [8..195] [1033..1232]

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Predicted Domain #1
Region A:
Residues: [1-197]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIQKVSNKD LSRKDKRRFN IESKVNKIYQ NFYSERDNQY KDRLTALQTD LTSLHQGDNG  60
   61 QYARQVRDLE EERDLELVRL RLFEEYRVSR SGIEFQEDIE KAKAEHEKLI KLCKERLYSS 120
  121 IEQKIKKLQE ERLLMDVANV HSYAMNYSRP QYQKNTRSHT VSGWDSSSNE YGRDTANESA 180
  181 TDTGAGNDRR TLRRRNA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [198-327]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKDTRGNNNN QDESDFQTGN GSGSNGHGSR QGSQFPHFNN LTYKSGMNSD SDFLQGINEG  60
   61 TDLYAFLFGE KNPKDNANGN EKKKNRGAQR YSTKTAPPLQ SLKPDEVTED ISLIRELTGQ 120
  121 PPAPFRLRSD 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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