YRC Public Data Repository - Protein Structure Prediction

Protein:	RV161_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RV161_YEAST.

Description	E-value	Query Range	Subject Range
RVS161 - Amphiphysin-like lipid raft protein; interacts with Rvs167p and regulates polarization of the actin ... RV161_YEAST - Reduced viability upon starvation protein 161 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288... ORFP:2446 - YCR009C, Contig c87 3568-4365 reverse complement gi\|151943829 - gi\|151943829\|gb\|EDN62129.1\| amphiphysin-like lipid raft protein [Saccharomyces cerevisiae YJM789]	2.0E-50	[1..265]	[1..265]
HOB3_SCHPO - Protein hob3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hob3 PE=1 SV=1 hob3 - BAR adaptor protein Hob3	3.0E-49	[1..262]	[1..260]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	6.0E-49	[1..262]	[7..266]
AMPH_RAT - Amphiphysin OS=Rattus norvegicus GN=Amph PE=1 SV=1	9.0E-48	[3..236]	[10..237]
AMPH - amphiphysin	2.0E-46	[3..236]	[10..237]
gi\|18376206 - gi\|18376206\|emb\|CAD21322.1\| probable cytosceletal binding protein [Neurospora crassa]	8.0E-44	[1..261]	[1..271]
AMPH_CHICK - Amphiphysin OS=Gallus gallus GN=AMPH PE=2 SV=1	9.0E-44	[3..236]	[10..237]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWEGFKKAI NRAGHSVIIK NVDKTIDKEY DMEERRYKVL QRAGEALQKE AKGFLDSLRA  60
   61 VTASQTTIAE VISNLYDDSK YVAGGGYNVG NYYLQCVQDF DSETVKQLDG PLRETVLDPI 120
  121 TKFSTYFKEI EEAIKKRDHK KQDFDAAKAK VRRLVDKPAK DASKLPRAEK ELSLAKDIFE 180
  181 NLNNQLKTEL PQLVSLRVPY FDPSFEALIK IQLRFCTDGY TRLAQIQQYL DQQSRDDYAN 240
  241 GLLDTKIEEL LGQMTSLDIC ALGIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	1i49A_
Description:	Arfaptin, Rac-binding fragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits