| Protein: | RT04_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 394 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT04_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..394] | [1..394] |
|
|
3.0E-75 | [182..388] | [7..233] |
|
|
7.0E-75 | [183..388] | [4..229] |
|
|
8.0E-75 | [182..384] | [7..229] |
|
|
9.0E-75 | [183..387] | [4..228] |
|
|
9.0E-75 | [182..384] | [7..229] |
|
|
1.0E-74 | [183..387] | [4..228] |
|
|
4.0E-74 | [183..389] | [4..230] |
|
|
1.0E-73 | [183..386] | [4..227] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MQRHVFARNF RRLSLLRNPS LTKRFQSSAS GAANTPNNND EVMLLQQKLL YDEIRSELKS 60
61 LSQVPEDEIL PELKKSLEQD KLSDKEQQLE AELSDFFRNY ALLNKLFDSK TLDGQSSTTT 120
121 AAATPTKP
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.444 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.596 | a.1.1 | Globin-like |
| View | Download | 0.541 | a.4.1 | Homeodomain-like |
| View | Download | 0.384 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.596 | a.1.1 | Globin-like |
| View | Download | 0.541 | a.4.1 | Homeodomain-like |
| View | Download | 0.470 | a.1.1 | Globin-like |
| View | Download | 0.444 | d.188.1 | Prokaryotic ribosomal protein L17 |
| View | Download | 0.384 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.367 | a.1.1 | Globin-like |
| View | Download | 0.355 | a.7.1 | Spectrin repeat |
| View | Download | 0.340 | a.1.1 | Globin-like |
| View | Download | 0.330 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.312 | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
| View | Download | 0.300 | a.1.1 | Globin-like |
| View | Download | 0.297 | a.3.1 | Cytochrome c |
| View | Download | 0.285 | a.47.2 | t-snare proteins |
| View | Download | 0.279 | a.1.1 | Globin-like |
| View | Download | 0.258 | f.1.5 | Exotoxin A, middle domain |
| View | Download | 0.254 | d.110.4 | SNARE-like |
| View | Download | 0.251 | a.118.3 | Sec7 domain |
| View | Download | 0.242 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.239 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.231 | a.77.1 | DEATH domain |
| View | Download | 0.230 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.229 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.226 | a.1.1 | Globin-like |
| View | Download | 0.222 | a.7.1 | Spectrin repeat |
| View | Download | 0.221 | a.1.1 | Globin-like |
| View | Download | 0.214 | a.130.1 | Chorismate mutase II |
| View | Download | 0.214 | a.19.1 | Fertilization protein |
| View | Download | 0.213 | a.126.1 | Serum albumin-like |
| View | Download | 0.208 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.208 | a.77.1 | DEATH domain |
| View | Download | 0.205 | a.4.3 | ARID-like |
| View | Download | 0.203 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [129-394] |
1 11 21 31 41 51
| | | | | |
1 YPNLIPSAND KPYSSQELFL RQLNHSMRTA KLGATISKVY YPHKDIFYPP LPENITVESL 60
61 MSAGVHLGQS TSLWRSSTQS YIYGEYKGIH IIDLNQTLSY LKRAAKVVEG VSESGGIILF 120
121 LGTRQGQKRG LEEAAKKTHG YYVSTRWIPG TLTNSTEISG IWEKQEIDSN DNPTERALSP 180
181 NETSKQVKPD LLVVLNPTEN RNALLEAIKS RVPTIAIIDT DSEPSLVTYP IPGNDDSLRS 240
241 VNFLLGVLAR AGQRGLQNRL ARNNEK
|
| Detection Method: | |
| Confidence: | 382.221849 |
| Match: | 1fjgB_ |
| Description: | Ribosomal protein S2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| structural constituent of ribosome | 9.68569821712377 | bayes_pls_golite062009 |
| structural molecule activity | 9.23086340425923 | bayes_pls_golite062009 |
| binding | 1.22050473722317 | bayes_pls_golite062009 |
| RNA binding | 0.825542354503353 | bayes_pls_golite062009 |
| protein binding | 0.594755004067504 | bayes_pls_golite062009 |
| nucleic acid binding | 0.588158477256084 | bayes_pls_golite062009 |
