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View Structure Prediction Details

Protein: RM50_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 139 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM50_YEAST.

Description E-value Query
Range
Subject
Range
RM50_YEAST - 54S ribosomal protein L50, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
MRPL50 - Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation
gi|190408980 - gi|190408980|gb|EDV12245.1| 60S ribosomal protein L50, mitochondrial precursor [Saccharomyces cerevi...
2.0E-66 [1..139] [1..139]
gi|4139230 - gi|4139230|gb|AAD04176.1| mismatch repair protein [Arabidopsis thaliana]
0.002 [49..120] [455..531]

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Predicted Domain #1
Region A:
Residues: [1-139]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHCTQVCLS ALTKRTHRVK VQVLKDFPRF QLYKGQVANV KPSLMRNYLH NFNGAKYILS  60
   61 EEHDINTELL KQYQTLEAKL EEDHQQLSKR HETEVQKNME LRKESVFGHK KEEKPKEEKK 120
  121 GLLDSGITIE EVKIPGLDI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.334 0.904 structural constituent of ribosome a.156.1 S13-like H2TH domain
View Download 0.215 0.904 structural constituent of ribosome a.47.2 t-snare proteins
View Download 0.392 0.904 structural constituent of ribosome a.24.14 FAT domain of focal adhesion kinase
View Download 0.214 0.904 structural constituent of ribosome f.18.1 F1F0 ATP synthase subunit A


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