YRC Public Data Repository - Protein Structure Prediction

Protein:	RM36_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM36_YEAST.

Description	E-value	Query Range	Subject Range
gi\|151946514 - gi\|151946514\|gb\|EDN64736.1\| YmL36 [Saccharomyces cerevisiae YJM789] gi\|190408721 - gi\|190408721\|gb\|EDV11986.1\| 60S ribosomal protein L36, mitochondrial precursor [Saccharomyces cerevi... MRPL36 - Mitochondrial ribosomal protein of the large subunit; overproduction suppresses mutations in the COX... gi\|207347668 - gi\|207347668\|gb\|EDZ73765.1\| YBR122Cp-like protein [Saccharomyces cerevisiae AWRI1631] RM36_YEAST - 54S ribosomal protein L36, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	8.0E-56	[1..177]	[1..177]
gi\|44982236 - gi\|44982236\|gb\|AAS51545.1\| ADL375Wp [Ashbya gossypii ATCC 10895] gi\|45187498, gi\|... - gi\|45187498\|ref\|NP_983721.1\| ADL375Wp [Ashbya gossypii ATCC 10895], gi\|44982236\|gb\|AAS51545.1\| ADL37...	7.0E-49	[1..177]	[1..171]
gi\|40740613, gi\|... - gi\|67526275\|ref\|XP_661199.1\| hypothetical protein AN3595.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	6.0E-34	[15..168]	[27..159]
gi\|49067982, gi\|... - gi\|71004292\|ref\|XP_756812.1\| hypothetical protein UM00665.1 [Ustilago maydis 521], ref\|XP_398280.1\| ...	4.0E-26	[10..129]	[174..290]
gi\|46110260, gi\|... - gi\|46110260\|ref\|XP_382188.1\| hypothetical protein FG02012.1 [Gibberella zeae PH-1], gi\|42545719\|gb\|E...	4.0E-25	[9..128]	[27..129]
gi\|85102223 - gi\|85102223\|ref\|XP_961294.1\| hypothetical protein NCU04138 [Neurospora crassa OR74A] gi\|12718224, gi\|... - gi\|32405730\|ref\|XP_323478.1\| hypothetical protein [Neurospora crassa], gi\|28922837\|gb\|EAA32058.1\| pr...	2.0E-24	[11..114]	[40..129]
RL31_PROMM - 50S ribosomal protein L31 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpmE PE=3 SV=1	5.0E-24	[35..137]	[2..92]
orf19.3205, orf1... - orf19.3205 CGDID:CAL0003196 Assembly 19, Contig19-10170 (87798, 87166) CDS, reverse complemented, tr... gi\|46436346, gi\|... - gi\|68482981\|ref\|XP_714621.1\| likely mitochondrial ribosomal protein MRPL36p [Candida albicans SC5314...	7.0E-23	[26..177]	[43..207]
gi\|153840404, gi... - gi\|153840404\|ref\|ZP_01993071.1\| ribosomal protein L31 [Vibrio parahaemolyticus AQ3810], gi\|149745932... RL31_VIBPA - 50S ribosomal protein L31 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpmE PE... RL31_VIBPA - 50S ribosomal protein L31 OS=Vibrio parahaemolyticus GN=rpmE PE=3 SV=1	2.0E-22	[36..113]	[2..73]
gi\|107104149 - gi\|107104149\|ref\|ZP_01368067.1\| hypothetical protein PaerPA_01005222 [Pseudomonas aeruginosa PACS2] gi\|194549229, gi... - gi\|84317704\|ref\|ZP_00966142.1\| COG0254: Ribosomal protein L31 [Pseudomonas aeruginosa C3719], gi\|254... RL31_PSEAE - 50S ribosomal protein L31 OS=Pseudomonas aeruginosa GN=rpmE PE=1 SV=1 gi\|194555054, gi... - gi\|84323864\|ref\|ZP_00971931.1\| COG0254: Ribosomal protein L31 [Pseudomonas aeruginosa 2192], gi\|2542... RL31_PSEA8 - 50S ribosomal protein L31 OS=Pseudomonas aeruginosa (strain LESB58) GN=rpmE PE=3 SV=1 RL31_PSEAB - 50S ribosomal protein L31 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpmE PE=1 SV=1 RL31_PSEAE - 50S ribosomal protein L31 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1...	2.0E-22	[36..113]	[2..71]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSIFAKRF ASTGSYPGST RITLPRRPAK KIQLGKSRPA IYHQFNVKME LSDGSVVIRR  60
   61 SQYPKGEIRL IQDQRNNPLW NPSRDDLVVV DANSGGSLDR FNKRYSSLFS VDSTTPNSSS 120
  121 ETVELSEENK KKTQIKKEEK EDVSEKAFGM DDYLSLLDDS EQQIKSGKLA SKKRDKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	1.31016553389632	bayes_pls_golite062009
protein binding	0.597909497479366	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: