YRC Public Data Repository - Protein Structure Prediction

Protein:	RM06_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM06_YEAST.

Description	E-value	Query Range	Subject Range
RL6_GEOSE - 50S ribosomal protein L6 OS=Geobacillus stearothermophilus GN=rplF PE=1 SV=2 RL6_GEOKA - 50S ribosomal protein L6 OS=Geobacillus kaustophilus (strain HTA426) GN=rplF PE=3 SV=1 RL6_GEOKA - 50S ribosomal protein L6 OS=Geobacillus kaustophilus GN=rplF PE=3 SV=1 gi\|221089337, gi... - gi\|221089337\|ref\|ZP_03558857.1\| ribosomal protein L6 [Geobacillus sp. Y412MC61], gi\|220706763\|gb\|EED... gi\|229500490, gi... - gi\|229500490\|ref\|ZP_04394151.1\| ribosomal protein L6 [Geobacillus sp. Y412MC52], gi\|229328607\|gb\|EEN...	1.0E-53	[17..212]	[2..175]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-53	[17..212]	[1..174]
RM06_YEAST - 54S ribosomal protein L6, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... MRPL6 - Mitochondrial ribosomal protein of the large subunit	3.0E-53	[1..214]	[1..214]
gi\|229349381, gi... - gi\|229513504\|ref\|ZP_04402968.1\| LSU ribosomal protein L6p (L9e) [Vibrio cholerae TMA 21], gi\|2293493... gi\|229345897, gi... - gi\|229516834\|ref\|ZP_04406280.1\| LSU ribosomal protein L6p (L9e) [Vibrio cholerae RC9], gi\|229345897\|... RL6_VIBCM - 50S ribosomal protein L6 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplF PE=3 SV=1 gi\|229507367, gi... - gi\|229507367\|ref\|ZP_04396872.1\| LSU ribosomal protein L6p (L9e) [Vibrio cholerae BX 330286], gi\|2293... gi\|229369528, gi... - gi\|229606873\|ref\|YP_002877521.1\| LSU ribosomal protein L6p (L9e) [Vibrio cholerae MJ-1236], gi\|22936... gi\|229521647, gi... - gi\|229521647\|ref\|ZP_04411065.1\| LSU ribosomal protein L6p (L9e) [Vibrio cholerae TM 11079-80], gi\|22... gi\|229335121, gi... - gi\|229527489\|ref\|ZP_04416881.1\| LSU ribosomal protein L6p (L9e) [Vibrio cholerae 12129(1)], gi\|22933... gi\|254846826, gi... - gi\|254851121\|ref\|ZP_05240471.1\| ribosomal protein L6 [Vibrio cholerae MO10], gi\|254846826\|gb\|EET2524... gi\|124113499, gi... - gi\|153217557\|ref\|ZP_01951238.1\| ribosomal protein L6 [Vibrio cholerae 1587], gi\|124113499\|gb\|EAY3231... gi\|121546404, gi... - gi\|121591736\|ref\|ZP_01678952.1\| ribosomal protein L6 [Vibrio cholerae 2740-80], gi\|121546404\|gb\|EAX5... gi\|126509187, gi... - gi\|153820266\|ref\|ZP_01972933.1\| ribosomal protein L6 [Vibrio cholerae NCTC 8457], gi\|126509187\|gb\|EA... gi\|153827615, gi... - gi\|153827615\|ref\|ZP_01980282.1\| ribosomal protein L6 [Vibrio cholerae MZO-2], gi\|149737901\|gb\|EDM528... gi\|153225188, gi... - gi\|153225188\|ref\|ZP_01954711.1\| ribosomal protein L6 [Vibrio cholerae MAK 757], gi\|124117354\|gb\|EAY3... gi\|153824191, gi... - gi\|229509709\|ref\|ZP_04399190.1\| LSU ribosomal protein L6p (L9e) [Vibrio cholerae B33], gi\|229353183\|... RL6_VIBCH - 50S ribosomal protein L6 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN... gi\|197750427, gi... - gi\|254292233\|ref\|ZP_04962997.1\| ribosomal protein L6 [Vibrio cholerae AM-19226], gi\|197750427\|ref\|YP... RL6_VIBCH - 50S ribosomal protein L6 OS=Vibrio cholerae GN=rplF PE=3 SV=1 gi\|153831164, gi... - gi\|153831164\|ref\|ZP_01983831.1\| ribosomal protein L6 [Vibrio cholerae 623-39], gi\|148873351\|gb\|EDL71...	6.0E-51	[17..214]	[2..177]
RL6_CLOPS - 50S ribosomal protein L6 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplF PE=3 SV=1 RL6_CLOP1 - 50S ribosomal protein L6 OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB ... gi\|177907733, gi... - gi\|182626943\|ref\|ZP_02954676.1\| ribosomal protein L6 [Clostridium perfringens D str. JGS1721], gi\|17... RL6_CLOPE - 50S ribosomal protein L6 OS=Clostridium perfringens (strain 13 / Type A) GN=rplF PE=3 SV=1 RL6_CLOPE - 50S ribosomal protein L6 OS=Clostridium perfringens GN=rplF PE=3 SV=1 gi\|169296727, gi... - gi\|169347044\|ref\|ZP_02865986.1\| ribosomal protein L6 [Clostridium perfringens C str. JGS1495], gi\|16... gi\|168215191, gi... - gi\|170713397\|gb\|EDT25579.1\| ribosomal protein L6 [Clostridium perfringens CPE str. F4969], gi\|168215... gi\|170710172, gi... - gi\|170710172\|gb\|EDT22354.1\| ribosomal protein L6 [Clostridium perfringens B str. ATCC 3626], gi\|1682... gi\|168205219, gi... - gi\|170663257\|gb\|EDT15940.1\| ribosomal protein L6 [Clostridium perfringens E str. JGS1987], gi\|168205...	2.0E-50	[17..212]	[2..176]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	2.0E-50	[17..214]	[1..176]
gi\|42984 - gi\|42984\|emb\|CAA25720.1\| unnamed protein product [Escherichia coli]	2.0E-50	[17..214]	[2..177]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIQRRLLS QTLFLRSQVG SLPLYISPEV QVSINALSMP RIIRKGRTSM NISQNITVKG  60
   61 PKGELSVEVP DFLHLDKDEK HGKINVTVQN SEDKHQRSMW GTVRSLINNH IIGVTEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	287.232149
Match:	1c04B_
Description:	50S subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.94614353072897	bayes_pls_golite062009
structural molecule activity	9.3691467221987	bayes_pls_golite062009
binding	1.17169736942297	bayes_pls_golite062009
protein binding	0.574304313407193	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [118-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLAVLRFVGT GYRAQLENDG KFVNVKVGAS IKQGLDVPEG IVVKTPAPTS LIIEGCNKQQ  60
   61 VLLFAAKLRK FHPPEPYKGK GIYVNDETIK LKDKKIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	287.232149
Match:	1c04B_
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: