YRC Public Data Repository - Protein Structure Prediction

Protein:	RM02_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	371 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM02_YEAST.

Description	E-value	Query Range	Subject Range
gi\|151944525 - gi\|151944525\|gb\|EDN62803.1\| YmL23 [Saccharomyces cerevisiae YJM789] gi\|190409002 - gi\|190409002\|gb\|EDV12267.1\| 60S ribosomal protein L2, mitochondrial precursor [Saccharomyces cerevis... gi\|207341611 - gi\|207341611\|gb\|EDZ69618.1\| YNL005Cp-like protein [Saccharomyces cerevisiae AWRI1631] MRP7 - Mitochondrial ribosomal protein of the large subunit RM02_YEAST - 54S ribosomal protein L2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...	0.0	[1..371]	[1..371]
RM02_KLULA - 60S ribosomal protein L2, mitochondrial OS=Kluyveromyces lactis GN=MRPL2 PE=3 SV=2 RM02_KLULA - 54S ribosomal protein L2, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 7...	0.0	[11..371]	[3..364]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-49	[23..154]	[56..183]
RK27_TOBAC - 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1	1.0E-47	[22..147]	[46..167]
RK27_ARATH - 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=2 SV=1	4.0E-46	[21..145]	[52..172]
RM02_SCHPO - 54S ribosomal protein L27, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m... mrp7 - mitochondrial ribosomal protein subunit L27	6.0E-37	[3..133]	[11..144]
RL27_BRUAB - 50S ribosomal protein L27 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpmA PE=3 SV=1 gi\|254698153 - gi\|254698153\|ref\|ZP_05159981.1\| 50S ribosomal protein L27 [Brucella abortus bv. 2 str. 86/8/59] gi\|254700491 - gi\|254700491\|ref\|ZP_05162319.1\| 50S ribosomal protein L27 [Brucella suis bv. 5 str. 513] gi\|254690002 - gi\|254690002\|ref\|ZP_05153256.1\| 50S ribosomal protein L27 [Brucella abortus bv. 6 str. 870] gi\|254694493 - gi\|254694493\|ref\|ZP_05156321.1\| 50S ribosomal protein L27 [Brucella abortus bv. 3 str. Tulya] gi\|254731036 - gi\|254731036\|ref\|ZP_05189614.1\| 50S ribosomal protein L27 [Brucella abortus bv. 4 str. 292] gi\|254703614 - gi\|254703614\|ref\|ZP_05165442.1\| 50S ribosomal protein L27 [Brucella suis bv. 3 str. 686] RL27_BRUA2 - 50S ribosomal protein L27 OS=Brucella abortus (strain 2308) GN=rpmA PE=3 SV=1 gi\|254719835 - gi\|254719835\|ref\|ZP_05181646.1\| 50S ribosomal protein L27 [Brucella sp. 83/13] RL27_BRUO2 - 50S ribosomal protein L27 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpmA PE=3 SV... RL27_BRUSU - 50S ribosomal protein L27 OS=Brucella suis biovar 1 (strain 1330) GN=rpmA PE=3 SV=1 RL27_BRUSI - 50S ribosomal protein L27 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpmA PE=3 SV=1 RL27_BRUC2 - 50S ribosomal protein L27 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpmA PE=3 SV=1 RL27_BRUA1 - 50S ribosomal protein L27 OS=Brucella abortus (strain S19) GN=rpmA PE=3 SV=1 gi\|237816213, gi... - gi\|237816213\|ref\|ZP_04595208.1\| ribosomal protein L27 [Brucella abortus str. 2308 A], gi\|237788675\|g... RL27_BRUAB - 50S ribosomal protein L27 OS=Brucella abortus GN=rpmA PE=3 SV=1 gi\|239825202, gi... - gi\|239832935\|ref\|ZP_04681264.1\| ribosomal protein L27 [Ochrobactrum intermedium LMG 3301], gi\|239825... RL27_BRUSU - 50S ribosomal protein L27 OS=Brucella suis GN=rpmA PE=3 SV=1 RL27_BRUMB - 50S ribosomal protein L27 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpmA PE=3 SV=1	4.0E-36	[27..114]	[1..86]
gi\|25295470, gi\|... - gi\|25295472\|pir\|\|B97693 ribosomal protein L27 VC0436 [imported] - Agrobacterium tumefaciens (strain ... RL27_AGRFC - 50S ribosomal protein L27 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpmA PE=3 SV=1	1.0E-35	[27..114]	[1..86]
RL27_RHILO - 50S ribosomal protein L27 OS=Rhizobium loti (strain MAFF303099) GN=rpmA PE=3 SV=1 RL27_RHILO - 50S ribosomal protein L27 OS=Rhizobium loti GN=rpmA PE=3 SV=1	4.0E-35	[27..111]	[1..83]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWNPILLDTS SFSFQKHVSG VFLQVRNATK RAAGSRTSMK DSAGRRLGPK KYEGQDVSTG  60
   61 EIIMRQRGTK FYPGENVGIG KDHSIFALEP GVVRYYLDPF HPKRKFIGVA LRRDLKLPSP 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	143.770868
Match:	1lnrU_
Description:	No description for 1lnrU_ was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
peptidyltransferase activity	4.12480250064405	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	0.660696125848255	bayes_pls_golite062009
catalytic activity	0.161830442565647	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [121-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HFEPTVRRFG RFELTNKRAA YKEENSISRK DYLAKPNILK QLEVRESKRK ELQDKLSKVL  60
   61 RDELKLDIKD IELATSYLIR VRASLKNGYP IEDARFNSRY YLKEEERLKA RRESWTNEKL 120
  121 SESLSKIDEC SDLLNSSTSF NNKLELHQYI SEQEKQALKA KLLEDLEKSQ HLETKKDKNY 180
  181 IKALFKDACN FLTLSEEVHL RRKYLKSVFP ETDSTVETKS GKKSIVSRRF DYTKNKVEVI 240
  241 ARSRRAFLSK L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: