YRC Public Data Repository - Protein Structure Prediction

Protein:	RGI1_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGI1_YEAST.

Description	E-value	Query Range	Subject Range
RGI2_YEAS7 - Respiratory growth induced protein 2 OS=Saccharomyces cerevisiae (strain YJM789) GN=RGI2 PE=3 SV=1 RGI2_YEAS2 - Respiratory growth induced protein 2 OS=Saccharomyces cerevisiae (strain JAY291) GN=RGI2 PE=3 SV=1 RGI2 - Putative protein of unknown function; expression induced under carbon limitation and repressed under... RGI2_YEAST - Respiratory growth induced protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RGI...	250.0	[0..11]	[158..13]
RGI1_CANGA - Respiratory growth induced protein 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NB... gi\|49527149 - gi\|49527149\|emb\|CAG60787.1\| unnamed protein product [Candida glabrata]	219.0	[0..1]	[158..1]
gi\|49641692 - gi\|49641692\|emb\|CAH01410.1\| KLLA0C08063p [Kluyveromyces lactis] RGI1_KLULA - Respiratory growth induced protein 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 7079...	204.0	[0..1]	[160..1]
gi\|44982569, gi\|... - gi\|45187808\|ref\|NP_984031.1\| ADL065Wp [Ashbya gossypii ATCC 10895], gi\|44982569\|gb\|AAS51855.1\| ADL06... gi\|44982569 - gi\|44982569\|gb\|AAS51855.1\| ADL065Wp [Ashbya gossypii ATCC 10895]	183.0	[0..13]	[158..14]
orf19.8934, orf1... - orf19.1354 CGDID:CAL0003857 Assembly 19, Contig19-10111 (9426, 10031) CDS, translated using codon ta... RGI1_CANAL - Respiratory growth induced protein 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RGI1 PE=... RGI1_CANAW - Respiratory growth induced protein 1 OS=Candida albicans (strain WO-1) GN=RGI1 PE=3 SV=1	112.0	[0..21]	[158..56]
RGI1_DEBHA - Respiratory growth induced protein 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 199... gi\|49654300 - gi\|49654300\|emb\|CAG86772.1\| DEHA2D03828p [Debaryomyces hansenii]	95.0	[0..22]	[158..52]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKDKKEVK VQTVTTEDGE TVKVFEDLQG FETFIANETE DDDFDHLHCK LNYYPPFVLH  60
   61 ESHEDPEKIS DAANSHSKKF VRHLHQHIEK HLLKDIKQAV RKPELKFHEK SKEETFDKIT 120
  121 WHYGEETEYH GRPFKIDVQV VCTHEDAMVF VDYKTHPVGA N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.549	a.26.1	4-helical cytokines
View	Download	0.549	a.26.1	4-helical cytokines
View	Download	0.510	a.24.1	Apolipoprotein
View	Download	0.510	a.24.1	Apolipoprotein
View	Download	0.489	a.24.16	Nucleotidyltransferase substrate binding subunit/domain
View	Download	0.466	a.92.1	Carbamoyl phosphate synthetase, large subunit connection domain
View	Download	0.466	a.92.1	Carbamoyl phosphate synthetase, large subunit connection domain
View	Download	0.464	a.24.1	Apolipoprotein
View	Download	0.464	a.24.1	Apolipoprotein
View	Download	0.422	a.63.1	Apolipophorin-III
View	Download	0.381	a.73.1	Retrovirus capsid protein, N-terminal core domain
View	Download	0.358	d.90.1	NADH oxidase/flavin reductase
View	Download	0.350	d.90.1	NADH oxidase/flavin reductase
View	Download	0.332	d.90.1	NADH oxidase/flavin reductase
View	Download	0.265	a.73.1	Retrovirus capsid protein, N-terminal core domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits