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View Structure Prediction Details

Protein: PSD1_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 500 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD1_YEAST.

Description E-value Query
Range
Subject
Range
gi|151944368 - gi|151944368|gb|EDN62646.1| phosphatidylserine decarboxylase [Saccharomyces cerevisiae YJM789]
PSD1 - Phosphatidylserine decarboxylase of the mitochondrial inner membrane, converts phosphatidylserine to...
gi|190409153 - gi|190409153|gb|EDV12418.1| phosphatidylserine decarboxylase [Saccharomyces cerevisiae RM11-1a]
PSD1_YEAST - Phosphatidylserine decarboxylase proenzyme 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC...
0.0 [1..500] [1..500]
gi|28923017, gi|... - gi|32404768|ref|XP_322997.1| hypothetical protein [Neurospora crassa], gi|28923017|gb|EAA32235.1| ph...
gi|85103222 - gi|85103222|ref|XP_961471.1| phosphatidylserine decarboxylase proenzyme 1, mitochondrial precursor [...
0.0 [99..494] [104..530]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [92..492] [69..407]
PISD_CRIGR - Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Cricetulus griseus GN=Pisd PE=1 SV=2
0.0 [92..492] [30..368]
gi|157929012, gi... - gi|157929012|gb|ABW03791.1| phosphatidylserine decarboxylase [synthetic construct], gi|157928362|gb|...
gi|119580390, gi... - gi|5921491|emb|CAB56394.1| phosphatidylserine decarboxylase [Homo sapiens], gi|16306618|gb|AAH01482....
2.0E-97 [126..492] [74..373]
CG5991-PA, CG599... - This gene is referred to in FlyBase by the symbol Dmel\CG5991 (CG5991, FBgn0026576). It is a protein...
gi|220943864 - gi|220943864|gb|ACL84475.1| CG5991-PA [synthetic construct]
4.0E-85 [102..494] [115..443]
PSD2_SCHPO - Phosphatidylserine decarboxylase proenzyme 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972...
SPAC25B8.03 - phosphatidylserine decarboxylase
3.0E-83 [102..491] [49..516]
PSD_SHIFL - Phosphatidylserine decarboxylase proenzyme OS=Shigella flexneri GN=psd PE=3 SV=1
gi|24115518, gi|... - gi|24115518|ref|NP_710028.1| phosphatidylserine decarboxylase [Shigella flexneri 2a str. 301], gi|24...
gi|30043799, gi|... - gi|30065535|ref|NP_839706.1| phosphatidylserine decarboxylase [Shigella flexneri 2a str. 2457T], gi|...
PSD_ECO57 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O157:H7 GN=psd PE=3 SV=1
EG10775 - phosphatidylserine decarboxylase / Phosphatidylserine decarboxylase, phospholipid biosynthesis
gi|12519145, gi|... - gi|15804752|ref|NP_290793.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 EDL933], gi|...
gi|15834393, gi|... - gi|15834393|ref|NP_313166.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. Sakai],...
PSD_ECOL5 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=psd...
PSD_SHIF8 - Phosphatidylserine decarboxylase proenzyme OS=Shigella flexneri serotype 5b (strain 8401) GN=psd PE=...
PSD_ECOLI - Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65) [Contains: Phosphatidylserine decarboxylase...
gi|124498715, gi... - gi|124531196|ref|ZP_01701541.1| phosphatidylserine decarboxylase [Escherichia coli B], gi|124498715|...
PSD_ECOL6 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O6 GN=psd PE=3 SV=1
gi|190904375, gi... - gi|75231245|ref|ZP_00717652.1| COG0688: Phosphatidylserine decarboxylase [Escherichia coli B7A], gi|...
gi|192958872, gi... - gi|75238689|ref|ZP_00722678.1| COG0688: Phosphatidylserine decarboxylase [Escherichia coli E110019],...
gi|191173365, gi... - gi|75239127|ref|ZP_00723107.1| COG0688: Phosphatidylserine decarboxylase [Escherichia coli F11], gi|...
gi|188492493, gi... - gi|75514922|ref|ZP_00737151.1| COG0688: Phosphatidylserine decarboxylase [Escherichia coli 53638], g...
PSD_SHIBS - Phosphatidylserine decarboxylase proenzyme OS=Shigella boydii serotype 4 (strain Sb227) GN=psd PE=3 ...
gi|85676914, gi|... - gi|89110883|ref|AP_004663.1| phosphatidylserine decarboxylase [Escherichia coli str. K-12 substr. W3...
EG10775 - phosphatidylserine decarboxylase / Phosphatidylserine decarboxylase, phospholipid biosynthesis
gi|83587281, gi|... - gi|83587281|ref|ZP_00925910.1| COG0688: Phosphatidylserine decarboxylase [Escherichia coli 101-1], g...
PSD_SHIB3 - Phosphatidylserine decarboxylase proenzyme OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS51...
PSD_ECOLC - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks...
PSD_ECO24 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=p...
gi|208819746, gi... - gi|208819746|ref|ZP_03260066.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC40...
PSD_ECO5E - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=psd...
PSD_ECOSE - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain SE11) GN=psd PE=3 SV=1
gi|217320594, gi... - gi|217324373|ref|ZP_03440457.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. TW14...
PSD_ECO8A - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O8 (strain IAI1) GN=psd PE=3 SV=1
PSD_ECO81 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O81 (strain ED1a) GN=psd PE=3 SV=1
PSD_ECOLU - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) G...
gi|254595582, gi... - gi|254796182|ref|YP_003081019.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. TW1...
gi|253975993, gi... - gi|254164092|ref|YP_003047200.1| phosphatidylserine decarboxylase [Escherichia coli B str. REL606], ...
gi|226840282, gi... - gi|254037176|ref|ZP_04871253.1| phosphatidylserine decarboxylase [Escherichia sp. 1_1_43], gi|226840...
gi|254290842, gi... - gi|254290842|ref|YP_003056590.1| phosphatidylserine decarboxylase [Escherichia coli BL21(DE3)], gi|2...
gi|189374956, gi... - gi|189374956|gb|EDU93372.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC869], ...
gi|242379686, gi... - gi|251787413|ref|YP_003001717.1| hypothetical protein B21_03992 [Escherichia coli BL21], gi|24237968...
PSD_ECOL6 - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / ...
gi|189375641, gi... - gi|189375641|gb|EDU94057.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC508], ...
PSD_ECOBW - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=psd...
PSD_ECODH - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain K12 / DH10B) GN=psd PE=3 SV=1
PSD_ECOSM - Phosphatidylserine decarboxylase proenzyme OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=psd PE=3 ...
gi|194434745, gi... - gi|194434745|ref|ZP_03066997.1| phosphatidylserine decarboxylase [Shigella dysenteriae 1012], gi|194...
gi|195935952 - gi|195935952|ref|ZP_03081334.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC40...
gi|208727564, gi... - gi|208807763|ref|ZP_03250100.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC42...
gi|208733368, gi... - gi|208812091|ref|ZP_03253420.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC40...
gi|168755349, gi... - gi|189357529|gb|EDU75948.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC4401],...
gi|189368562, gi... - gi|189368562|gb|EDU86978.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC4501],...
gi|168766439, gi... - gi|189364241|gb|EDU82660.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC4486],...
gi|187769870, gi... - gi|187769870|gb|EDU33714.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC4196],...
gi|189001811, gi... - gi|189001811|gb|EDU70797.1| phosphatidylserine decarboxylase [Escherichia coli O157:H7 str. EC4076],...
2.0E-72 [235..497] [8..289]
gi|238910509 - gi|238910509|ref|ZP_04654346.1| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric...
PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7...
PSD_SALEP - Phosphatidylserine decarboxylase proenzyme OS=Salmonella enteritidis PT4 (strain P125109) GN=psd PE=...
PSD_SALG2 - Phosphatidylserine decarboxylase proenzyme OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=...
gi|204926953, gi... - gi|204926953|ref|ZP_03218155.1| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric...
PSD_SALPB - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G...
PSD_SALDC - Phosphatidylserine decarboxylase proenzyme OS=Salmonella dublin (strain CT_02021853) GN=psd PE=3 SV=...
gi|213428682 - gi|213428682|ref|ZP_03361432.1| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric...
PSD_SALPB - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) G...
gi|213052290 - gi|213052290|ref|ZP_03345168.1| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric...
PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis GN=psd PE=3 SV=1
PSD_SALPA - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A GN=psd PE=3 SV=1
lcl|NC_016856.1_... - [gene=psd] [protein=phosphatidylserine decarboxylase] [protein_id=YP_005240663.1] [location=compleme...
PSD_SALNS - Phosphatidylserine decarboxylase proenzyme OS=Salmonella newport (strain SL254) GN=psd PE=3 SV=1
gi|195630622, gi... - gi|195630622|gb|EDX49234.1| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se...
gi|205347968, gi... - gi|205347968|gb|EDZ34599.1| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se...
gi|205336305, gi... - gi|205336305|gb|EDZ23069.1| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se...
PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis (strain SC-B67) GN=psd PE=3 SV...
PSD_SALPK - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A (strain AKU_12601) GN=psd PE=3 ...
PSD_SALPA - Phosphatidylserine decarboxylase proenzyme OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=...
gi|197240792, gi... - gi|197262537|ref|ZP_03162611.1| phosphatidylserine decarboxylase [Salmonella enterica subsp. enteric...
PSD_SALSV - Phosphatidylserine decarboxylase proenzyme OS=Salmonella schwarzengrund (strain CVM19633) GN=psd PE=...
PSD_SALHS - Phosphatidylserine decarboxylase proenzyme OS=Salmonella heidelberg (strain SL476) GN=psd PE=3 SV=1
PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium GN=psd PE=3 SV=1
PSD_SALCH - Phosphatidylserine decarboxylase proenzyme OS=Salmonella choleraesuis GN=psd PE=3 SV=1
PSD_SALTY - Phosphatidylserine decarboxylase proenzyme OS=Salmonella typhimurium GN=psd PE=3 SV=1
gi|197289990, gi... - gi|197289990|gb|EDY29349.1| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se...
gi|167994768, gi... - gi|205327414|gb|EDZ14178.1| phosphatidylserine decarboxylase [Salmonella enterica subsp. enterica se...
9.0E-72 [235..497] [8..289]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIMPVKNAL AQGRTLLMGR MPAVKFSTRM QLRNRTAVLW NRKFSTRLFV QQRRSSGEIV  60
   61 DRAKAAAANS GRKQVSMKWV VLTSFTIVLG TILLVSRNDS TEEDATEGKK GRRTRKIKIF 120
  121 NNNWLFFCYS TLPLNAMSRL WGQVNSLTLP IWVRPWGYRL YSFLFGVNLD EMEDP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.404 N/A N/A d.13.1 HIT-like
View Download 0.393 N/A N/A d.13.1 HIT-like
View Download 0.384 N/A N/A d.15.6 Superantigen toxins, C-terminal domain
View Download 0.375 N/A N/A d.15.6 Superantigen toxins, C-terminal domain
View Download 0.369 N/A N/A d.15.6 Superantigen toxins, C-terminal domain

Predicted Domain #2
Region A:
Residues: [176-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLTHYANLSE FFYRNIKPGT RPVAQGEDVI ASPSDGKILQ VGIINSETGE IEQVKGMTYS  60
   61 IKEFLGTHSH PLMSKSASSL DLTSDEEKHR EFARVNRIQL AGSEDTEQPL LNFKNEGDQS 120
  121 VREFKPSVSK NIHLLSQLSL NYFSNGFSCS EPHDTELFFA VIYLAPGDYH HFHSPVDWVC 180
  181 KVRRHFPGDL FSVAPYFQRN FPNLFVLNER VALLGSWKYG FFSMTPVGAT NVGSIKLNFD 240
  241 QEFVTNSKSD KHLEPHTCYQ AVYENASKIL GGMPLVKGEE MGGFELGSTV VLCFEAPTEF 300
  301 KFDVRVGDKV KMGQKLGIIG KNDLK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 128.167491
Match: PF02666
Description: Phosphatidylserine decarboxylase

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.353 N/A N/A b.7.4 Rab geranylgeranyltransferase alpha-subunit, insert domain
View Download 0.352 N/A N/A d.24.1 Pili subunits
View Download 0.313 N/A N/A c.31.1 DHS-like NAD/FAD-binding domain
View Download 0.310 N/A N/A b.60.1 Lipocalins
View Download 0.308 N/A N/A a.26.1 4-helical cytokines

Predicted Domain #3
Region A:
Residues: [284-500]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLLNFKNEGD QSVREFKPSV SKNIHLLSQL SLNYFSNGFS CSEPHDTELF FAVIYLAPGD  60
   61 YHHFHSPVDW VCKVRRHFPG DLFSVAPYFQ RNFPNLFVLN ERVALLGSWK YGFFSMTPVG 120
  121 ATNVGSIKLN FDQEFVTNSK SDKHLEPHTC YQAVYENASK ILGGMPLVKG EEMGGFELGS 180
  181 TVVLCFEAPT EFKFDVRVGD KVKMGQKLGI IGKNDLK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 2gprA
Description: GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.08152507119016 bayes_pls_golite062009
catalytic activity 0.303926649807816 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle