YRC Public Data Repository - Protein Structure Prediction

Protein:	PRM5_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRM5_YEAST.

Description	E-value	Query Range	Subject Range
PRM5_YEAST - Pheromone-regulated membrane protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=P... PRM5 - Pheromone-regulated protein, predicted to have 1 transmembrane segment; induced during cell integrit...	3.0E-95	[1..318]	[1..318]
gi\|12718466, gi\|... - gi\|32405774\|ref\|XP_323500.1\| hypothetical protein [Neurospora crassa], gi\|28922859\|gb\|EAA32080.1\| hy... gi\|85102317 - gi\|85102317\|ref\|XP_961316.1\| hypothetical protein NCU04160 [Neurospora crassa OR74A]	7.0E-78	[2..311]	[46..329]

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Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVITIAKRG LPKLTTSTSS TTTASSSSTI TSVASSSSSL PLLSNSTSSS IIPSITPPSR  60
   61 NGNPYILDSG DMPNGTVFIV VGGIAGVIFL AILLWWVITT YSSHRLTRSV QDYESKMFST 120
  121 QHTQFYGDSP YMDYPAKENF QDQVHISESD ISPGNKDESV KDALVSHTNN EKPFLSNFER 180
  181 PLFSLASESN RNSLFISPTG DILYKTRLSK LYQESPRLLQ KPVIMTSDNV STNSLVSTIS 240
  241 SSSASSLDNG NEKEVGEDIR KPAKIASSPS RKLLNSPESD GSVNRNHSKG NLLVVQSKRK 300
  301 PTPSTYLEHM LEGKEQDE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits