YRC Public Data Repository - Protein Structure Prediction

Protein:	PAM17_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAM17_YEAST.

Description	E-value	Query Range	Subject Range
PAM17_SCHPO - Presequence translocated-associated motor subunit pam17, mitochondrial OS=Schizosaccharomyces pombe ... pam17 - presequence translocase-associated motor subunit Pam17	281.0	[0..49]	[193..46]
PAM17_CANGA - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Candida glabrata (strain A... PAM17_CANGA - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Candida glabrata GN=PAM17 ...	265.0	[0..35]	[197..28]
PAM17_ASHGO - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Ashbya gossypii (strain AT... PAM17_ASHGO - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Ashbya gossypii GN=PAM17 P...	214.0	[0..37]	[197..26]
PAM17_KLULA - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Kluyveromyces lactis (stra... PAM17_KLULA - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Kluyveromyces lactis GN=PA...	209.0	[0..6]	[197..14]
PAM17_CANAL - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Candida albicans GN=PAM17 ... gi\|238880671 - gi\|238880671\|gb\|EEQ44309.1\| conserved hypothetical protein [Candida albicans WO-1] PAM17_CANAL - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Candida albicans (strain S...	181.0	[0..49]	[197..37]
gi\|68471792, gi\|... - gi\|68471792\|ref\|XP_719939.1\| potential mitochondrial protein Fmp16 [Candida albicans SC5314], gi\|684... orf19.7870, orf1... - orf19.240 CGDID:CAL0003975 Assembly 19, Contig19-10046 (20852, 21502) CDS, translated using codon ta...	181.0	[0..49]	[197..68]
PAM17_USTMA - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Ustilago maydis GN=PAM17 P... PAM17_USTMA - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Ustilago maydis (strain 52...	180.0	[0..44]	[193..75]
PAM17_DEBHA - Presequence translocated-associated motor subunit PAM17, mitochondrial precursor - Debaryomyces hans... gi\|50425077, gi\|... - gi\|50425077\|ref\|XP_461130.1\| hypothetical protein DEHA0F19129g [Debaryomyces hansenii CBS767], gi\|49...	176.0	[0..47]	[197..27]
PAM17_CRYNJ - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Cryptococcus neoformans va...	162.0	[0..33]	[193..42]
PAM17_CRYNB - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Cryptococcus neoformans va... PAM17_CRYNE - Presequence translocated-associated motor subunit PAM17, mitochondrial OS=Cryptococcus neoformans GN...	162.0	[0..33]	[193..42]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTSAIRLSS QRLFASQPSV TAAALRSTAT TLPLRSYSQP ASLQDSSILT WSDFFKLRKQ  60
   61 QRRINVGSSL FTALLGCNVS WAYLSTMEID PTQMLFGFDP LTVISAGIIA SGALGYLLGP 120
  121 IVGSQVFKLS HNQQLAQFNN KNKEFLKHII NNRVDASSQS FSNPVPDYYG EKIGSLKEYK 180
  181 QWLRDCHAYA KKAKEFL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	119.045757
Match:	PF08566.1
Description:	No description for PF08566.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits