YRC Public Data Repository - Protein Structure Prediction

Protein:	PALI_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PALI_YEAST.

Description	E-value	Query Range	Subject Range
RIM9 - Protein of unknown function, involved in the proteolytic activation of Rim101p in response to alkali... PALI_YEAST - pH-response regulator protein palI/RIM9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...	9.0E-85	[1..239]	[1..239]
PALI_EMENI - pH-response regulator protein palI/RIM9 OS=Emericella nidulans GN=palI PE=1 SV=2 PALI_EMENI - pH-response regulator protein palI/RIM9 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 11...	5.0E-60	[8..229]	[9..227]
MAC1_SCHPO - Membrane-anchored protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mac1 PE=1 SV=1 mac1 - membrane anchored protein Mac1	4.0E-49	[3..206]	[5..202]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-39	[6..178]	[50..250]
gi\|85099060 - gi\|85099060\|ref\|XP_960709.1\| hypothetical protein NCU01357 [Neurospora crassa OR74A] gi\|28922227, gi\|... - gi\|32412740\|ref\|XP_326850.1\| hypothetical protein ( (AL353822) related to palI protein [Neurospora c...	4.0E-38	[6..178]	[9..209]
gi\|16904252 - gi\|16904252\|gb\|AAL30833.1\|AF440398_1 pal1-like protein [Mycosphaerella graminicola]	1.0E-16	[8..101]	[10..92]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSMIHIVVF LLAITTMFEI LPLITVPVTK YLSLSSFRNH YYGLFGWCVR GQNQELMCTK  60
   61 MKIGYDSTDV DSSGHVLTLP SNSKVVVSNL LVVHPISLAF TGTLLILAVI IMVTPL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [117-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDSPEMLLFT ALFSLPTFML CLLCFLVDIL LFISKLDWPG WLMLAATISV ALCCSMLWVM  60
   61 RRVVSVKKYE SQQSIAHACS MEQYSISDIY QSKQNGNSSE YEVAPTHTDS LIAPEVTYRG 120
  121 FIE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits