YRC Public Data Repository - Protein Structure Prediction

Protein:	NRM1_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRM1_YEAST.

Description	E-value	Query Range	Subject Range
NRM1_YEAS7 - Transcription factor NRM1 OS=Saccharomyces cerevisiae (strain YJM789) GN=NRM1 PE=3 SV=1 gi\|207341590 - gi\|207341590\|gb\|EDZ69600.1\| YNR009Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408990 - gi\|190408990\|gb\|EDV12255.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] NRM1_YEAST - Transcription factor NRM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NRM1 PE=1 SV=1 NRM1 - Transcriptional co-repressor of MBF (MCB binding factor)-regulated gene expression; Nrm1p associates...	0.0	[1..249]	[1..249]
gi\|9628389, gi\|8... - gi\|9628389\|ref\|NP_042980.1\| U87 [Human herpesvirus 6A], gi\|854064\|emb\|CAA58336.1\| U87 [Human herpesv...	0.008	[122..222]	[473..567]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.009	[122..222]	[574..668]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIMKQRLPL GEFSSSKINK LAIANIADAS EPRNHGENNV GTVCLPSIKS LMVSPEVYEN  60
   61 TKSLPVPLMR SSGGGMACAS KSSCQDGIST KTTSRDYSEL SKKLQIRLQF AYYKYKTKQT 120
  121 DKNFTDLKSK HSITRPSKVA THSKSEPLTR RRKLVLSQGH YKTPARSKIK TPSSICSHDN 180
  181 TSSFTSFRGV SESSSTTADM NVADTTTPIR NNINTKHSNS HNRTLYQRQE TPTSIKAAKS 240
  241 LIHLFTSNQ

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Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits