YRC Public Data Repository - Protein Structure Prediction

Protein:	LPE10_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	413 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPE10_YEAST.

Description	E-value	Query Range	Subject Range
LPE10_YEAST - Mitochondrial inner membrane magnesium transporter MFM1 OS=Saccharomyces cerevisiae (strain ATCC 204... LPE10 - Mitochondrial inner membrane magnesium transporter, involved in maintenance of magnesium concentrati...	4.0E-68	[1..413]	[1..413]
gi\|25295831 - pir\|\|AG2319 hypothetical protein all4110 [imported] - Nostoc sp. (strain PCC 7120) gi\|17231602, gi\|... - gi\|17231602\|ref\|NP_488150.1\| hypothetical protein all4110 [Nostoc sp. PCC 7120], gi\|17133245\|dbj\|BAB...	5.0E-61	[28..393]	[25..370]
CORA_THEMA - Cobalt/magnesium transport protein CorA OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 ... CORA_THEMA - Magnesium transport protein CorA OS=Thermotoga maritima GN=corA PE=1 SV=1	6.0E-61	[47..393]	[34..350]
gi\|7441680 - pir\|\|S77053 magnesium/cobalt transport protein sll0671 - Synechocystis sp. (strain PCC 6803) gi\|1006592, gi\|1... - gi\|16331946\|ref\|NP_442674.1\| magnesium and cobalt transport protein [Synechocystis sp. PCC 6803], gi...	6.0E-60	[29..395]	[24..370]
gi\|34496718, gi\|... - gi\|34496718\|ref\|NP_900933.1\| magnesium and cobalt transport protein [Chromobacterium violaceum ATCC ...	5.0E-59	[8..394]	[1..345]
gi\|186464154, gi... - gi\|23128303\|ref\|ZP_00110154.1\| COG0598: Mg2+ and Co2+ transporters [Nostoc punctiforme PCC 73102], g...	2.0E-58	[28..395]	[26..373]
gi\|21228742, gi\|... - gi\|21228742\|ref\|NP_634664.1\| magnesium/cobalt transporter CorA [Methanosarcina mazei Go1], gi\|209072...	6.0E-56	[59..393]	[50..355]
gi\|20090573, gi\|... - gi\|20090573\|ref\|NP_616648.1\| magnesium Mg(2+)/cobalt Co(2+) transport protein [Methanosarcina acetiv...	1.0E-55	[84..394]	[66..356]
gi\|15024829, gi\|... - gi\|15895127\|ref\|NP_348476.1\| magnesium/cobalt transporter CorA [Clostridium acetobutylicum ATCC 824]... gi\|25295824 - pir\|\|E97128 magnesium and cobalt transport protein CAC1852 [imported] - Clostridium acetobutylicum	6.0E-55	[59..393]	[49..353]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAFPRVLPF RHQRSYNNIL LRTVRLFGSS LSSFDFSRQM PKVDPDNTAA MLLQKNLIQR  60
   61 NNMLYGYGSG TIRCTLLDST GRAKSPLVEI KREDLVSKHG LLPRDLRKIE KSRKNDL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-413]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPSLLVRENS ILISLLTVKA LIKPDMVIIF DSAGSGITLN SEAHKDFIND MKLRLKNQET  60
   61 SELNSDPLPY EFRALETIFI SALSNLTSEM KVLLTICKGV LQDLEFSITR DKLRFLLGQN 120
  121 KKLSSFNKKA VLVKDMLDDL LEQDDMLCDM YLTDKKAGKI RVQDDHTEIE MLLETYHNYV 180
  181 DEIVQKSESA ISDVKTTEEI INIILDSNRN ELMLLGIRYA IGMLSLGGAL FLGSIYGMNL 240
  241 ESFIEESNYA YLTVTILGLI STVWLYAKGI RHLHKLQRMT LLSKIKTDSV HELLKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits