YRC Public Data Repository - Protein Structure Prediction

Protein:	MBF1_KLULA
Organism:	Kluyveromyces lactis NRRL Y-1140
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBF1_KLULA.

Description	E-value	Query Range	Subject Range
MBF1_DEBHA - Multiprotein-bridging factor 1 OS=Debaryomyces hansenii GN=MBF1 PE=3 SV=1 MBF1_DEBHA - Multiprotein-bridging factor 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NB...	149.0	[0..1]	[150..1]
gi\|50312323, gi\|... - gi\|50312323\|ref\|XP_456195.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645331\|emb\|CAG9890...	144.0	[0..1]	[150..48]
MBF1_CANGA - Multiprotein-bridging factor 1 OS=Candida glabrata GN=MBF1 PE=3 SV=1 MBF1_CANGA - Multiprotein-bridging factor 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 062...	142.0	[0..1]	[150..1]
MBF1_ASHGO - Multiprotein-bridging factor 1 OS=Ashbya gossypii GN=MBF1 PE=3 SV=1 MBF1_ASHGO - Multiprotein-bridging factor 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL...	140.0	[0..2]	[150..3]
MBF1_YARLI - Putative multi-protein-binding factor 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MBF1 PE=... MBF1_YARLI - Putative multi-protein-binding factor 1 OS=Yarrowia lipolytica GN=MBF1 PE=3 SV=1	139.0	[0..2]	[150..3]
gi\|190407599 - gi\|190407599\|gb\|EDV10866.1\| multiprotein [Saccharomyces cerevisiae RM11-1a] gi\|151945381 - gi\|151945381\|gb\|EDN63624.1\| multiprotein bridging factor [Saccharomyces cerevisiae YJM789] MBF1 - Transcriptional coactivator that bridges the DNA-binding region of Gcn4p and TATA-binding protein Sp... MBF1_YEAST - Multiprotein-bridging factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MBF1 PE=1...	139.0	[0..1]	[150..1]
gi\|2285788, gi\|1... - gi\|2285788\|dbj\|BAA21658.1\| Multiprotein bridging factor 1 [Bombyx mori], gi\|112984062\|ref\|NP_0010368...	136.0	[0..1]	[148..1]
gi\|54641337, gi\|... - gi\|54641337\|gb\|EAL30087.1\| GA17985 [Drosophila pseudoobscura pseudoobscura], gi\|125977112\|ref\|XP_001... gi\|54641337\|gb\|E... - GA17985-PA [Drosophila pseudoobscura], GA17985 [Drosophila pseudoobscura pseudoobscura] gi\|195168135, gi... - gi\|195168135\|ref\|XP_002024887.1\| GL17867 [Drosophila persimilis], gi\|194108317\|gb\|EDW30360.1\| GL1786...	135.0	[0..1]	[150..1]
gi\|220953732, gi... - gi\|220953732\|gb\|ACL89409.1\| mbf1-PA [synthetic construct], gi\|220943758\|gb\|ACL84422.1\| mbf1-PA [synt... gi\|190654830, gi... - gi\|194872614\|ref\|XP_001973047.1\| GG13561 [Drosophila erecta], gi\|190654830\|gb\|EDV52073.1\| GG13561 [D... gi\|194197164, gi... - gi\|195590845\|ref\|XP_002085155.1\| GD14645 [Drosophila simulans], gi\|194197164\|gb\|EDX10740.1\| GD14645 ... FBpp0294020, FBp... - The gene multiprotein bridging factor 1 is referred to in FlyBase by the symbol Dmel\mbf1 (CG4143, F...	134.0	[0..1]	[150..1]
gi\|91092834 - gi\|91092834\|ref\|XP_966347.1\| PREDICTED: similar to Multiprotein bridging factor 1 isoform 1 [Triboli...	134.0	[0..1]	[150..1]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEWEPSTVI GRKVRIGGGG PRQQVARTQG QINEARRSGM VLSVDKKYGT TNSKSSPEGQ  60
   61 RLTKVDRETD IV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.30103
Match:	PF08523.1
Description:	No description for PF08523.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [73-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPKKIDVSVG KAIQKGRQDK NLTQKDLATK INEKPTIVND YESGRGIPNQ QILGKMERAL  60
   61 GIKLRGKNIG EPLGGPKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	1x57A
Description:	Solution structures of the HTH domain of human EDF-1 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits