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View Structure Prediction Details

Protein: LDB16_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 256 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LDB16_YEAST.

Description E-value Query
Range
Subject
Range
gi|190406433 - gi|190406433|gb|EDV09700.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
LDB16_YEAST - Protein LDB16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LDB16 PE=1 SV=2
LDB16 - Protein of unknown function; null mutants have decreased net negative cell surface charge; GFP-fusio...
gi|207347341 - gi|207347341|gb|EDZ73541.1| YCL005Wp-like protein [Saccharomyces cerevisiae AWRI1631]
0.0 [1..256] [1..256]
gi|1870130 - gi|1870130|emb|CAB06795.1| unknown [Saccharomyces pastorianus]
0.0 [1..256] [1..256]

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Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVVDWSVQL CMGVISPLFR ALVQLPLSIF VWNGFQLVAL PINIPLRLFL GTSLSRLVAQ  60
   61 TSTLDFYVVL TLFQYFAVLC AFGSIIGLIF GFILGVFHSI CGVPSVYISL EWKRWFAPIR 120
  121 TVLERASTSI VNIMRGQTIA PIPMPKPNPT HISKPNMKKF HDEPGADDMT ITHDVNCYIT 180
  181 PCQTPTNEKI QHYNNDSFNT TTTDDEPTDI WDRSDTYQNS FVTNETLMSL SNRAKLRRNA 240
  241 SDADIVNIKI LRRNSR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [137-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTIAPIPMPK PNPTHISKPN MKKFHDEPGA DDMTITHDVN CYITPCQTPT NEKIQHYNND  60
   61 SFNTTTTDDE PTDIWDRSDT YQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [219-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSFVTNETLM SLSNRAKLRR NASDADIVNI KILRRNSR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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