YRC Public Data Repository - Protein Structure Prediction

Protein:	FAF1_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	346 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAF1_YEAST.

Description	E-value	Query Range	Subject Range
gi\|190406241 - gi\|190406241\|gb\|EDV09508.1\| protein FAF1 [Saccharomyces cerevisiae RM11-1a] gi\|207344278 - gi\|207344278\|gb\|EDZ71476.1\| YIL019Wp-like protein [Saccharomyces cerevisiae AWRI1631] FAF1_YEAST - Protein FAF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAF1 PE=1 SV=1 FAF1 - Protein required for pre-rRNA processing and 40S ribosomal subunit assembly	0.0	[1..346]	[1..346]
YAW8_SCHPO - Uncharacterized protein C3F10.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3F10... SPAC3F10.08c - rRNA processing protein Faf1	2.0E-65	[12..274]	[7..232]

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Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLDDDDYIK QMELQRKAFE SQFGSLESMG FEDKTKNIRT EVDTRDSSGD EIDNSDHGSD  60
   61 FKDGTIESSN SSDEDSGNET AEENNQDSKP KTQPKVIRFN GPSDVYVPPS KKTQKLLRSG 120
  121 KTLTQINKKL ESTEAKEEKE DETLEAENLQ NDLELQQFLR ESHLLSAFNN GGSGSTNSGV 180
  181 SLTLQSMGGG NDDGIVYQDD QVIGKARSRT LEMRLNRLSR VNGHQDKINK LEKVPMHIRR 240
  241 GMIDKHVKRI KKYEQEAAEG GIVLSKVKKG QFRKIESTYK KDIERRIGGS IKARDKEKAT 300
  301 KRERGLKISS VGRSTRNGLI VSKRDIARIS GGERSGKFNG KKKSRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits