| Protein: | EF3B_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 1044 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EF3B_YEAST.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1044] | [1..1044] |
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0.0 | [1..1044] | [1..1045] |
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0.0 | [2..1044] | [5..1050] |
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0.0 | [2..1044] | [5..1049] |
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0.0 | [2..1042] | [5..1046] |
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0.0 | [1..1043] | [1..1042] |
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0.0 | [18..1042] | [21..1054] |
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Region A: Residues: [1-321] |
1 11 21 31 41 51
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1 MSDSQQSITV LEELFRKLET ATSETREGIS SELSSFLNGN IIEHDVPEVF FDEFQKAIQS 60
61 KQKALNTLGA VAYIANETNL SPSVEPYIVA TVPSVCSKAG SKDNDVQLAA TKALKAIASA 120
121 VNPVAVKALL PHLIHSLETS NKWKEKVAVL EVISVLVDAA KEQIALRMPE LIPVLSESMW 180
181 DTKKGVKEAA TTTITKATET VDNKDIERFI PKLIECIANP NEVPETVHLL GATTFVAEVT 240
241 PATLSIMVPL LSRGLAERET SIKRKAAVII DNMCKLVEDP QVVAPFLGKL LPGLKNNFAT 300
301 IADPEAREVT LKALKTLRRV G
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| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
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Region A: Residues: [322-418] |
1 11 21 31 41 51
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1 NVGEDDVLPE ISHAGDVSTT LGVIKELLEP EKVAPRFTIV VEYIAAIAAN LIDERIIDQQ 60
61 TWFTHVTPYM TIFLHEKTAK EILDDFRKRA VDNIPVG
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| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.793 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.942 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.783 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.725 | a.118.12 | Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain |
| View | Download | 0.725 | a.118.8 | TPR-like |
| View | Download | 0.713 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.671 | a.118.1 | ARM repeat |
| View | Download | 0.605 | a.51.1 | Cytochrome c oxidase subunit h |
| View | Download | 0.582 | a.181.1 | Antibiotic binding domain of TipA-like multidrug resistance regulators |
| View | Download | 0.580 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.571 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.557 | a.74.1 | Cyclin-like |
| View | Download | 0.549 | a.77.1 | DEATH domain |
| View | Download | 0.540 | a.24.4 | Hemerythrin |
| View | Download | 0.536 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.520 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.504 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.498 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.494 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.490 | a.46.1 | Methionine synthase domain |
| View | Download | 0.477 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.472 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.472 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.463 | a.77.1 | DEATH domain |
| View | Download | 0.461 | a.26.1 | 4-helical cytokines |
| View | Download | 0.436 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.425 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.413 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.412 | a.126.1 | Serum albumin-like |
| View | Download | 0.410 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.395 | a.77.1 | DEATH domain |
| View | Download | 0.388 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.388 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.378 | a.2.3 | Chaperone J-domain |
| View | Download | 0.378 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.378 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.375 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.370 | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.367 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.363 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.362 | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.359 | a.74.1 | Cyclin-like |
| View | Download | 0.352 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.352 | a.24.16 | Nucleotidyltransferase substrate binding subunit/domain |
| View | Download | 0.349 | a.59.1 | PAH2 domain |
| View | Download | 0.346 | a.29.2 | Bromodomain |
| View | Download | 0.345 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.343 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.342 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.342 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.338 | a.3.1 | Cytochrome c |
| View | Download | 0.337 | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.337 | a.4.1 | Homeodomain-like |
| View | Download | 0.334 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.333 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.332 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.332 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.329 | a.74.1 | Cyclin-like |
| View | Download | 0.315 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.311 | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.311 | a.16.1 | S15/NS1 RNA-binding domain |
| View | Download | 0.307 | a.24.3 | Cytochromes |
| View | Download | 0.306 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.306 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.300 | a.118.13 | Arp2/3 complex 16 kDa subunit ARPC5 |
| View | Download | 0.299 | a.39.1 | EF-hand |
| View | Download | 0.299 | a.118.1 | ARM repeat |
| View | Download | 0.295 | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.292 | a.47.2 | t-snare proteins |
| View | Download | 0.289 | d.14.1 | Ribosomal protein S5 domain 2-like |
| View | Download | 0.286 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.286 | d.226.1 | GIY-YIG endonuclease |
| View | Download | 0.284 | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.283 | a.4.7 | Ribosomal protein L11, C-terminal domain |
| View | Download | 0.279 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.279 | a.7.1 | Spectrin repeat |
| View | Download | 0.276 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.274 | a.2.3 | Chaperone J-domain |
| View | Download | 0.273 | a.89.1 | Methyl-coenzyme M reductase alpha and beta chain C-terminal domain |
| View | Download | 0.272 | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.272 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.270 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.266 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.261 | i.1.1 | Ribosome and ribosomal fragments |
| View | Download | 0.259 | a.64.1 | Saposin |
| View | Download | 0.258 | a.118.8 | TPR-like |
| View | Download | 0.258 | d.189.1 | PX domain |
| View | Download | 0.257 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.246 | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.244 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.244 | a.159.1 | Protein serine/threonine phosphatase 2C, C-terminal domain |
| View | Download | 0.242 | a.7.1 | Spectrin repeat |
| View | Download | 0.240 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.239 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.237 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.237 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.235 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.231 | a.118.1 | ARM repeat |
| View | Download | 0.230 | a.26.1 | 4-helical cytokines |
| View | Download | 0.230 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.229 | f.23.16 | Subunit III of photosystem I reaction centre, PsaF |
| View | Download | 0.227 | d.79.1 | YjgF-like |
| View | Download | 0.226 | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.226 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.223 | a.112.1 | Description not found. |
| View | Download | 0.216 | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.212 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.211 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.210 | d.68.1 | Translation initiation factor IF3, C-terminal domain |
| View | Download | 0.210 | d.68.6 | DNA-binding protein Sso10b (AlbA) |
| View | Download | 0.209 | a.2.6 | Effector domain of the protein kinase pkn/prk1 |
| View | Download | 0.209 | a.116.1 | GTPase activation domain, GAP |
| View | Download | 0.208 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.206 | a.130.1 | Chorismate mutase II |
| View | Download | 0.206 | d.29.1 | Ribosomal protein L31e |
| View | Download | 0.204 | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.203 | a.39.1 | EF-hand |
| View | Download | 0.202 | a.23.3 | Methane monooxygenase hydrolase, gamma subunit |
| View | Download | 0.201 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.200 | a.28.3 | Retrovirus capsid protein C-terminal domain |
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Region A: Residues: [419-645] |
1 11 21 31 41 51
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1 PNFQDEEDEG EDLCNCEFSL AYGAKILLNK TQLRLKRGRR YGLCGPNGAG KSTLMRSIAN 60
61 GQVDGFPTQD ECRTVYVEHD IDNTHSDMSV LDFVYSGNVG TKDVITSKLK EFGFSDEMIE 120
121 MPIASLSGGW KMKLALARAV LKDADILLLD EPTNHLDTVN VEWLVNYLNT CGITSVIVSH 180
181 DSGFLDKVCQ YIIHYEGLKL RKYKGNLSEF VQKCPTAQSY YELGASD
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| Detection Method: | |
| Confidence: | 93.383689 |
| Match: | 1b0uA_ |
| Description: | ATP-binding subunit of the histidine permease |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [646-1044] |
1 11 21 31 41 51
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1 LEFQFPTPGY LEGVKTKQKA IVKVSNMTFQ YPGTTKPQVS DVTFQCSLSS RIAVIGPNGA 60
61 GKSTLINVLT GELLPTSGEV YTHENCRIAY IKQHAFAHIE SHLDKTPSEY IQWRFQTGED 120
121 RETMDRANRQ INENDAEAMN KIFKIEGTPR RVAGIHSRRK FKNTYEYECS FLLGENIGMK 180
181 SERWVPMMSV DNAWLPRGEL IESHSKMVAE IDMKEALASG QFRALTRKEI ELHCAMLGLD 240
241 SELVSHSRIR GLSGGQKVKL VLAACTWQRP HLIVLDEPTN YLDRDSLGAL SKALKAFEGG 300
301 VIIITHSAEF TKNLTDEVWA VKDGKMTPSG HNWVAGQGAG PRIEKKEEEG DKFDAMGNKI 360
361 NSGKKKSKLS SAELRKKKKE RMKKKKEMGD EYVSSDEDF
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| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
