YRC Public Data Repository - Protein Structure Prediction

Protein:	ECM3_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	613 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ECM3_YEAST.

Description	E-value	Query Range	Subject Range
ECM3 - Non-essential protein of unknown function; involved in signal transduction and the genotoxic respons... ECM3_YEAST - Protein ECM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ECM3 PE=1 SV=1	0.0	[1..613]	[1..613]
gi\|14331098 - gi\|14331098\|emb\|CAC41018.1\| putative membrane protein [Zygosaccharomyces bailii]	4.0E-75	[4..341]	[3..314]
gi\|4151321 - gi\|4151321\|gb\|AAD04377.1\| putative auxin efflux carrier protein; AtPIN1 [Arabidopsis thaliana]	3.0E-60	[10..267]	[7..256]
gi\|10441744 - gi\|10441744\|gb\|AAG17172.1\|AF190881_1 PIN1-like auxin transport protein [Populus tremula x Populus tr...	6.0E-60	[10..267]	[7..257]
SPAC5D6.04 - auxin family transmembrane transporter YDQ4_SCHPO - Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC5D...	7.0E-51	[342..594]	[175..431]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHITLGQAI WASVRPIIKI YLIIGVGFGL CKMNILTVQA TRSISDIVLT ILLPCLSFNK  60
   61 IVANIEDNDI KDVGIICLTS VILFATGLGF AFIVRSVLPV PKRWRGGILA GGMFPNISDL 120
  121 PIAYLQSMDQ GFIFTEAEGE KGVANVIIFL AMFLICVFNL GGFRLIENDF HYKG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [175-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDDEENTLTN DDSAQQPTQP IEGNSSSSSN QDILKEPNES TVPNSSQASY ISEKNKKEKT  60
   61 ELSVPKPTHT APPAIDDRSS NSSAVVSIDS ITHSLRTNHV DAQSVSELND PTYRTRSQPI 120
  121 AYTTESRTSH VHNNRRNSIT GSLRSIDMRE LPAEGMSDLI REYSNVDQYG RRRKSSISSQ 180
  181 GAPSVLQADG TISPNL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [371-613]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRTSTLQRVK TSNLTRIITS DATVSKKDIE TSGSSLPKWL QKFPLTKFFV FFLKNCLRPC  60
   61 SMAVILALII AFIPWVKALF VTTSNTPKIK QAPDNAPALT FIMDFTSYVG AASVPFGLIL 120
  121 LGATLGRLKI GKLYPGFWKS AVVLVFLRQC IMPIFGVLWC DRLVKAGWLN WENDKMLLFV 180
  181 TAITWNLPTM TTLIYFTASY TPEDETEPVQ MECTSFFLML QYPLMVVSLP FLVSYFIKVQ 240
  241 MKL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits