YRC Public Data Repository - Protein Structure Prediction

Protein:	CYB5_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYB5_YEAST.

Description	E-value	Query Range	Subject Range
gi\|190409098 - gi\|190409098\|gb\|EDV12363.1\| cytochrome b5 [Saccharomyces cerevisiae RM11-1a] CYB5 - Cytochrome b5, involved in the sterol and lipid biosynthesis pathways; acts as an electron donor to ... gi\|151944425 - gi\|151944425\|gb\|EDN62703.1\| cytochrome b5 [Saccharomyces cerevisiae YJM789] CYB5_YEAST - Cytochrome b5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYB5 PE=1 SV=2	4.0E-39	[1..120]	[1..120]
gi\|125550542 - gi\|125550542\|gb\|EAY96251.1\| hypothetical protein OsI_18149 [Oryza sativa Indica Group] CYB5_ORYSJ - Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2 CYB5_ORYSA - Cytochrome b5 - Oryza sativa (Rice)	7.0E-38	[3..117]	[7..124]
CYB5B_ARATH - Cytochrome b5 isoform B OS=Arabidopsis thaliana GN=CYTB5-B PE=1 SV=1	7.0E-38	[3..117]	[6..123]
CYB5_BOROF - Cytochrome b5 OS=Borago officinalis PE=2 SV=1	1.0E-37	[1..115]	[1..118]
gi\|123995335, gi... - gi\|123995335\|gb\|ABM85269.1\| cytochrome b5 type A (microsomal) [synthetic construct], gi\|123980760\|gb... CYB5A - cytochrome b5 type A (microsomal)	3.0E-37	[3..116]	[10..126]
gi\|1613840 - gi\|1613840\|gb\|AAB16807.1\| cytochrome b5 [Mesocricetus auratus]	3.0E-37	[3..116]	[10..126]
gi\|2647949 - gi\|2647949\|emb\|CAA04702.1\| cytochrome b5 [Olea europaea]	3.0E-37	[1..117]	[1..120]
CYB5_TOBAC - Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1	4.0E-37	[3..117]	[6..123]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKVYSYQEV AEHNGPENFW IIIDDKVYDV SQFKDEHPGG DEIIMDLGGQ DATESFVDIG  60
   61 HSDEALRLLK GLYIGDVDKT SERVSVEKVS TSENQSKGSG TLVVILAILM LGVAYYLLNE 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	204.626727
Match:	1eueA_
Description:	Cytochrome b5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits