YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22778541, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22778541, gi|....

Description	E-value	Query Range	Subject Range
gi\|29894730, gi\|... - gi\|30019187\|ref\|NP_830818.1\| transcriptional repressor [Bacillus cereus ATCC 14579], gi\|29894730\|gb\|... gi\|228674853, gi... - gi\|229108598\|ref\|ZP_04238210.1\| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15], gi\|2... gi\|229143741, gi... - gi\|229143741\|ref\|ZP_04272162.1\| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24], gi\|... gi\|229126443, gi... - gi\|229126443\|ref\|ZP_04255458.1\| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4], gi\|...	129.0	[0..28]	[177..1]
gi\|228899709, gi... - gi\|228899709\|ref\|ZP_04063958.1\| hypothetical protein bthur0014_9250 [Bacillus thuringiensis IBL 4222... gi\|75764621, gi\|... - gi\|75764621\|ref\|ZP_00744064.1\| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis sero...	127.0	[0..28]	[177..1]
gi\|163938942, gi... - gi\|89209470\|ref\|ZP_01187880.1\| Helix-turn-helix motif [Bacillus weihenstephanensis KBAB4], gi\|891525...	126.0	[0..28]	[177..1]
gi\|50196919, gi\|... - gi\|50196919\|ref\|YP_052614.1\| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'], gi\|50082... gi\|190566543, gi... - gi\|190566543\|ref\|ZP_03019460.1\| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I], ... gi\|254734209 - gi\|254734209\|ref\|ZP_05191922.1\| hypothetical protein BantWNA_03453 [Bacillus anthracis str. Western ... gi\|172081360, gi... - gi\|177653556\|ref\|ZP_02935730.1\| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174], gi\|17... gi\|229266340, gi... - gi\|229601932\|ref\|YP_002865577.1\| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248], gi\|2... gi\|170127128, gi... - gi\|170707968\|ref\|ZP_02898417.1\| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389], gi\|17... gi\|167638961, gi... - gi\|167638961\|ref\|ZP_02397235.1\| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193], gi\|16... gi\|165871721, gi... - gi\|165871721\|ref\|ZP_02216366.1\| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488], gi\|16... gi\|254758581 - gi\|254758581\|ref\|ZP_05210608.1\| hypothetical protein BantA9_09739 [Bacillus anthracis str. Australia... gi\|254753484 - gi\|254753484\|ref\|ZP_05205520.1\| hypothetical protein BantV_13483 [Bacillus anthracis str. Vollum]	125.0	[0..28]	[177..1]
gi\|49331364, gi\|... - gi\|49479808\|ref\|YP_035283.1\| DNA-binding protein transcriptional regulator [Bacillus thuringiensis s...	124.0	[0..28]	[177..1]
gi\|89894475, gi\|... - gi\|89894475\|ref\|YP_517962.1\| hypothetical protein DSY1729 [Desulfitobacterium hafniense Y51], gi\|893...	109.0	[0..28]	[177..1]
gi\|23114179, gi\|... - gi\|68206518\|ref\|ZP_00558704.1\| Helix-turn-helix motif [Desulfitobacterium hafniense DCB-2], gi\|68169...	109.0	[0..28]	[177..1]
gi\|49081740 - gi\|49081740\|gb\|AAT50270.1\| PA5301 [synthetic construct]	101.0	[0..28]	[170..1]
gi\|218774633, gi... - gi\|218894404\|ref\|YP_002443274.1\| putative transcriptional regulator [Pseudomonas aeruginosa LESB58],... gi\|115588669, gi... - gi\|53726745\|ref\|ZP_00141783.2\| COG1396: Predicted transcriptional regulators [Pseudomonas aeruginosa... gi\|15600494, gi\|... - gi\|9951617\|gb\|AAG08686.1\|AE004943_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]... gi\|254238004, gi... - gi\|254238004\|ref\|ZP_04931327.1\| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719], gi\|1... gi\|126197190, gi... - gi\|254243812\|ref\|ZP_04937134.1\| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192], gi\|19... gi\|11352188 - pir\|\|E82982 probable transcription regulator PA5301 [imported] - Pseudomonas aeruginosa (strain PAO1...	99.0	[0..28]	[170..1]
gi\|78365654, gi\|... - gi\|78365654\|ref\|ZP_00835939.1\| Helix-turn-helix motif:Cupin region [Shewanella sp. PV-4], gi\|7836219...	98.0	[0..28]	[155..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLVAPITIF TISLQLSNNE TGKAMNNMFF GEKLKKEREK RGWSQDYLAE KVYVSRQSVS  60
   61 KWETGKNYPS IEVIINLSDL FDITIDELLR SDEELKEKVI RDSKQLAYPK WKTFFDSMFL 120
  121 LGAFLLLVKL IILGVNYFAG TEFLVTDGKL LKIIANFLPL ALMIIGGIGS DSLKNKYIN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	1y9qA
Description:	Crystal Structure of HTH_3 family Transcriptional Regulator from Vibrio cholerae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.00600026101746601	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: