YRC Public Data Repository - Protein Structure Prediction

Protein:	COX19_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX19_YEAST.

Description	E-value	Query Range	Subject Range
COX19_CANGA - Cytochrome c oxidase assembly protein COX19 OS=Candida glabrata GN=COX19 PE=3 SV=1 COX19_CANGA - Cytochrome c oxidase assembly protein COX19 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 37...	132.0	[0..2]	[82..3]
COX19_KLULA - Cytochrome c oxidase assembly protein COX19 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / D... COX19_KLULA - Cytochrome c oxidase assembly protein COX19 OS=Kluyveromyces lactis GN=COX19 PE=3 SV=1	132.0	[0..1]	[90..1]
COX19_ASHGO - Cytochrome c oxidase assembly protein COX19 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGS... COX19_ASHGO - Cytochrome c oxidase assembly protein COX19 OS=Ashbya gossypii GN=COX19 PE=3 SV=1	125.0	[0..1]	[82..1]
gi\|25404634, gi\|... - pir\|\|G96691 hypothetical protein T12I7.4 [imported] - Arabidopsis thaliana, gi\|12322293\|gb\|AAG51175...	122.0	[0..11]	[81..49]
SPCC1672.04c - mitochondrial copper ion transport protein COX19_SCHPO - Cytochrome c oxidase assembly protein cox19 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	121.0	[0..16]	[82..6]
CE27165 - status:Confirmed UniProt:Q95ZT5 protein_id:CAC42299.1	113.0	[0..17]	[83..16]
gi\|46444250, gi\|... - gi\|68467255\|ref\|XP_722289.1\| hypothetical protein CaO19.12432 [Candida albicans SC5314], gi\|46444250... orf19.12432 - COX19 CGDID:CAL0006369 Assembly 19, Contig19-20216 (133305, 133712) CDS, translated using codon tabl... gi\|238878283 - gi\|238878283\|gb\|EEQ41921.1\| cytochrome c oxidase assembly protein COX19 [Candida albicans WO-1]	110.0	[0..6]	[87..8]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNPGSSLS ALRPTPPERG SFPLDHDGEC TKYMQEYLKC MQLVQNENAM NCRLLAKDYL  60
   61 RCRMDHQLMD YDEWSHLGLP EDAPGNNGKT IKDATDNK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.837	a.29.12	Description not found.
View	Download	0.788	a.29.14	Description not found.
View	Download	0.716	a.7.6	Ribosomal protein S20
View	Download	0.694	a.7.6	Ribosomal protein S20
View	Download	0.674	a.7.6	Ribosomal protein S20
View	Download	0.613	a.7.6	Ribosomal protein S20
View	Download	0.611	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.596	c.78.2	Aspartate/glutamate racemase
View	Download	0.592	a.118.8	TPR-like
View	Download	0.581	a.7.6	Ribosomal protein S20
View	Download	0.399	a.1.1	Globin-like
View	Download	0.273	d.87.2	CO dehydrogenase flavoprotein C-terminal domain-like
View	Download	0.273	d.87.2	CO dehydrogenase flavoprotein C-terminal domain-like
View	Download	0.249	d.87.2	CO dehydrogenase flavoprotein C-terminal domain-like
View	Download	0.207	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits