YRC Public Data Repository - Protein Structure Prediction

Protein:	BET1_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BET1_YEAST.

Description	E-value	Query Range	Subject Range
SYP61_ARATH - Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1	2.0E-25	[1..141]	[103..242]
gi\|190406227 - gi\|190406227\|gb\|EDV09494.1\| protein transport protein BET1 [Saccharomyces cerevisiae RM11-1a] BET1 - Type II membrane protein required for vesicular transport between the endoplasmic reticulum and Golg... gi\|151943154 - gi\|151943154\|gb\|EDN61489.1\| blocked early in transport [Saccharomyces cerevisiae YJM789] BET1_YEAST - Protein transport protein BET1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET1 PE=1...	8.0E-23	[1..142]	[1..142]
gi\|10801642 - gi\|10801642\|dbj\|BAB16738.1\| hypothetical protein [Macaca fascicularis]	4.0E-22	[4..115]	[31..140]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-21	[17..136]	[164..289]
gi\|7595847, gi\|7... - gi\|7595847\|gb\|AAF64478.1\| syntaxin 1A [Macaca mulatta], gi\|74136291\|ref\|NP_001028037.1\| syntaxin 1B ...	2.0E-21	[17..136]	[154..279]
STX1A_BOVIN - Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1	3.0E-21	[17..140]	[154..283]

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Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRFAGGNA YQRDTGRTQL FGPADGSNSL DDNVSSALGS TDKLDYSQST LASLESQSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	1dn1B_
Description:	Syntaxin 1A N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [60-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQMGAMGQRI KALKSLSLKM GDEIRGSNQT IDQLGDTFHN TSVKLKRTFG NMMEMARRSG  60
   61 ISIKTWLIIF FMVGVLFFWV WIT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	1dn1B_
Description:	Syntaxin 1A N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits