YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22778188, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22778188, gi|....

Description	E-value	Query Range	Subject Range
FLAG_VIBPA - Protein FlaG OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=flaG PE=4 SV=2 FLAG_VIBPA - Protein flaG OS=Vibrio parahaemolyticus GN=flaG PE=4 SV=2	101.0	[0..5]	[118..25]
gi\|551514 - gi\|551514\|gb\|AAC27802.1\| FlaG [Vibrio parahaemolyticus] gi\|153837009, gi... - gi\|153837009\|ref\|ZP_01989676.1\| FlaG [Vibrio parahaemolyticus AQ3810], gi\|149749782\|gb\|EDM60527.1\| F...	100.0	[0..5]	[118..25]
gi\|15611755, gi\|... - gi\|4155242\|gb\|AAD06263.1\| putative FLAGELLIN PROTEIN [Helicobacter pylori J99], gi\|15611755\|ref\|NP_2... gi\|7465216 - pir\|\|H71900 probable flagellin protein - Helicobacter pylori (strain J99)	100.0	[0..3]	[119..2]
gi\|7465178 - pir\|\|G64613 polar flagellin - Helicobacter pylori (strain 26695) gi\|2313876, gi\|1... - gi\|2313876\|gb\|AAD07799.1\| polar flagellin (flaG) [Helicobacter pylori 26695], gi\|15645370\|ref\|NP_207...	100.0	[0..3]	[119..2]
gi\|109646090, gi... - gi\|68205548\|ref\|ZP_00557749.1\| Flagellar protein FlaG protein [Desulfitobacterium hafniense DCB-2], ...	100.0	[0..3]	[120..19]
gi\|57167057, gi\|... - gi\|57238253\|ref\|YP_178666.1\| flagellar protein FlaG [Campylobacter jejuni RM1221], gi\|57167057\|gb\|AA... gi\|57020714, gi\|... - gi\|57167592\|ref\|ZP_00366732.1\| probable flagellar protein Cj0547 [Campylobacter coli RM2228], gi\|570... gi\|85843174, gi\|... - gi\|86153448\|ref\|ZP_01071652.1\| flagellar protein FlaG [Campylobacter jejuni subsp. jejuni HB93-13], ... gi\|157385792, gi... - gi\|157414828\|ref\|YP_001482084.1\| flagellar protein FlaG [Campylobacter jejuni subsp. jejuni 81116], ... gi\|205355403, gi... - gi\|205355403\|ref\|ZP_03222174.1\| possible flagellar protein [Campylobacter jejuni subsp. jejuni CG842... gi\|11282089 - pir\|\|C81401 probable flagellar protein Cj0547 [imported] - Campylobacter jejuni (strain NCTC 11168) gi\|218562199, gi... - gi\|6968015\|emb\|CAB75183.1\| possible flagellar protein [Campylobacter jejuni subsp. jejuni NCTC 11168... gi\|121613608, gi... - gi\|167005202\|ref\|ZP_02270960.1\| possible flagellar protein [Campylobacter jejuni subsp. jejuni 81-17...	100.0	[0..1]	[119..1]
gi\|85841228, gi\|... - gi\|86151599\|ref\|ZP_01069813.1\| flagellar protein FlaG [Campylobacter jejuni subsp. jejuni 260.94], g...	100.0	[0..1]	[119..1]
gi\|88190627, gi\|... - gi\|88596938\|ref\|ZP_01100174.1\| flagellar protein FlaG [Campylobacter jejuni subsp. jejuni 84-25], gi...	100.0	[0..1]	[119..1]
gi\|108563161, gi... - gi\|108563161\|ref\|YP_627477.1\| flagellar protein FlaG [Helicobacter pylori HPAG1], gi\|107836934\|gb\|AB...	99.0	[0..3]	[119..2]
gi\|49078072 - gi\|49078072\|gb\|AAT49748.1\| PA1093 [synthetic construct]	98.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVNNIGASK PAVVDIPTNK VALSQTKSIT NENSHQTQGG YAEKIVNKVD LEDAVDHMNE  60
   61 LLKPIRRNLK FEMHEKLERY YVTVVDSETS EVIKEIPPKK MLDMYAELAE FMGFLIDEKI 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.30103
Match:	2hc5A
Description:	No description for 2hc5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits