YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23099778, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23099778, gi|....

Description	E-value	Query Range	Subject Range
gi\|56381250, gi\|... - gi\|56421408\|ref\|YP_148726.1\| naphthoate synthase [Geobacillus kaustophilus HTA426], gi\|56381250\|dbj\|... gi\|229499009, gi... - gi\|229499009\|ref\|ZP_04392700.1\| naphthoate synthase [Geobacillus sp. Y412MC52], gi\|229330165\|gb\|EEN9... gi\|158428757, gi... - gi\|158428759\|pdb\|2IEX\|C Chain C, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) Fro... gi\|221088543, gi... - gi\|221088543\|ref\|ZP_03558072.1\| naphthoate synthase [Geobacillus sp. Y412MC61], gi\|220707477\|gb\|EED6...	298.0	[0..1]	[272..1]
gi\|20807045, gi\|... - gi\|20807045\|ref\|NP_622216.1\| 3-hydroxybutyryl-CoA dehydratase [Thermoanaerobacter tengcongensis MB4]... gi\|20807045 - gi\|20807045\|ref\|NP_622216.1\| enoyl-CoA hydratase [Thermoanaerobacter tengcongensis MB4]	293.0	[0..10]	[266..2]
gi\|89099706, gi\|... - gi\|89099706\|ref\|ZP_01172580.1\| naphthoate synthase [Bacillus sp. NRRL B-14911], gi\|89085649\|gb\|EAR64...	289.0	[0..1]	[272..1]
gi\|68548715, gi\|... - gi\|68548715\|ref\|ZP_00588184.1\| Naphthoate synthase [Pelodictyon phaeoclathratiforme BU-1], gi\|682442...	287.0	[0..2]	[272..3]
gi\|46446698, gi\|... - gi\|46446698\|ref\|YP_008063.1\| naphthoate synthase [Candidatus Protochlamydia amoebophila UWE25], gi\|4...	287.0	[0..2]	[272..4]
gi\|52081566, gi\|... - gi\|52786944\|ref\|YP_092773.1\| naphthoate synthase [Bacillus licheniformis ATCC 14580], gi\|52349446\|gb...	287.0	[0..1]	[272..1]
MENB_STAS1 - 1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ...	286.0	[0..1]	[272..1]
MENB_STAHJ - 1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=menB PE=3...	286.0	[0..1]	[272..1]
gi\|21647863, gi\|... - gi\|21674659\|ref\|NP_662724.1\| naphthoate synthase [Chlorobium tepidum TLS], gi\|21647863\|gb\|AAM73066.1...	285.0	[0..1]	[272..20]
MENB_BACSU - 1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Bacillus subtilis (strain 168) GN=menB PE=1 SV=2 gi\|221324546 - gi\|221324546\|ref\|ZP_03605840.1\| naphthoate synthase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221320263 - gi\|221320263\|ref\|ZP_03601557.1\| naphthoate synthase [Bacillus subtilis subsp. subtilis str. JH642] MENB_BACSU - 1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Bacillus subtilis GN=menB PE=1 SV=2 gi\|221315346 - gi\|221315346\|ref\|ZP_03597151.1\| naphthoate synthase [Bacillus subtilis subsp. subtilis str. NCIB 361...	284.0	[0..1]	[272..1]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEWQKVNS YEEIIYEKYN GIAKVTINRP EKRNAFTPLT VKEMIDAFID ARDDSSIGVI  60
   61 VLAGEGEKAF CSGGDQSVRG HGGYVGTDEV PRLNVLDLQR LIRTIPKPVI AMVSGYAIGG 120
  121 GHVLHVVCDL TIAADNAIFG QTGPKVGSFD AGYGAGYLAR LVGHKRAREI WYLCRQYNAD 180
  181 EAYEMGLVNT VVPLDKLEEE TIQWCEEILE KSPTALRFLK ASFNADTDGL AGLQQLGGDA 240
  241 TLLYYTTDEA KEGRDAFKEK RKPDFKQFPR FP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.09691
Match:	2iexA
Description:	No description for 2iexA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits