YRC Public Data Repository - Protein Structure Prediction

Protein:	ENSOCUP000000099...
Organism:	Oryctolagus cuniculus
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSOCUP000000099....

Description	E-value	Query Range	Subject Range
gi\|208968067, gi... - gi\|208968067\|dbj\|BAG73872.1\| YEATS domain containing 4 [synthetic construct], gi\|167774041\|gb\|ABZ924... YEATS4 - YEATS domain containing 4 gi\|114645787 - gi\|114645787\|ref\|XP_001155404.1\| PREDICTED: glioma-amplified sequence-41 isoform 1 [Pan troglodytes] ENSCJAT00000003365 - null	306.0	[0..1]	[227..1]
gi\|115496730, gi... - gi\|81674278\|gb\|AAI09627.1\| YEATS domain containing 4 [Bos taurus], gi\|115496730\|ref\|NP_001069833.1\| ... gi\|238814999, gi... - gi\|251823926\|ref\|NP_001156531.1\| YEATS domain containing 4 [Ovis aries], gi\|238814999\|gb\|ACR56696.1\|...	303.0	[0..1]	[227..1]
gi\|52345874, gi\|... - gi\|89269060\|emb\|CAJ83529.1\| YEATS domain containing 4 [Xenopus tropicalis], gi\|52345874\|ref\|NP_00100...	301.0	[0..1]	[227..1]
gi\|18419436, gi\|... - gi\|18419436\|gb\|AAL69326.1\|AF410481_1 GAS41 [Gallus gallus], gi\|118405208\|ref\|NP_001072971.1\| YEATS d...	300.0	[0..1]	[227..1]
gi\|38014526, gi\|... - gi\|38014526\|gb\|AAH60411.1\| MGC68689 protein [Xenopus laevis], gi\|148232610\|ref\|NP_001083406.1\| hypot...	298.0	[0..1]	[227..1]
gi\|34864887, gi\|... - gi\|34864887\|ref\|XP_216890.2\| PREDICTED: similar to YEATS domain containing 4 [Rattus norvegicus], gi...	296.0	[0..5]	[227..1]
gi\|76682080 - gi\|76682080\|ref\|XP_872200.1\| PREDICTED: similar to YEATS domain containing 4 [Bos taurus] gi\|73968736 - gi\|73968736\|ref\|XP_531673.2\| PREDICTED: similar to YEATS domain containing 4 [Canis familiaris]	295.0	[0..5]	[227..1]
gi\|118790591, gi... - gi\|118790591\|ref\|XP_318687.3\| ENSANGP00000022234 [Anopheles gambiae str. PEST], gi\|116118019\|gb\|EAA1...	281.0	[0..5]	[224..2]
gi\|157132764, gi... - gi\|157132764\|ref\|XP_001662633.1\| YEATS domain containing protein 4 [Aedes aegypti], gi\|108871078\|gb\|...	281.0	[0..6]	[224..5]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKRMAEFGP DSGGRVKGVT IVKPIVYGNV ARYFGKKREE DGHTHQWTVY VKPYRNEDMS  60
   61 AYVKKIQFKL HESYGNPLRV VTKPPYEITE TGWGEFEIII KIFFIDPNER PVTLYHLLKL 120
  121 FQSDT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.537602
Match:	PF03366.7
Description:	No description for PF03366.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [126-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAMLGKKTVV SEFYDEMIFQ DPTAMMQQLL TTSRQLTLGA YKHETEFAEL EVKTREKLEA  60
   61 AKKKTSFEIA ELKERLKASR ETINCLKNEI RKLEEDDQTK DI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits