YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23099593, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23099593, gi|....

Description	E-value	Query Range	Subject Range
gi\|2634555, gi\|1... - gi\|2634555\|emb\|CAB14053.1\| yomI [Bacillus subtilis subsp. subtilis str. 168], gi\|16079194\|ref\|NP_390... gi\|81342088 - gi\|81342088\|sp\|O31976.1\|YOMI_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized transglycosy... TMP_BPSPB - Probable tape measure protein OS=Bacillus phage SPbeta GN=yomI PE=3 SV=1	170.0	[0..9]	[223..1336]
gi\|25493281 - pir\|\|D84006 lytic transglycosylase BH2852 [imported] - Bacillus halodurans (strain C-125) gi\|10175473, gi\|... - gi\|15615415\|ref\|NP_243718.1\| lytic transglycosylase [Bacillus halodurans C-125], gi\|10175473\|dbj\|BAB...	157.0	[0..24]	[223..32]
gi\|89098118, gi\|... - gi\|89098118\|ref\|ZP_01171004.1\| YjbJ [Bacillus sp. NRRL B-14911], gi\|89087281\|gb\|EAR66396.1\| YjbJ [Ba...	155.0	[0..64]	[219..39]
gi\|46019720 - gi\|46019720\|emb\|CAG25465.1\| Tlp protein [Bacillus thuringiensis serovar alesti]	150.0	[0..5]	[220..49]
gi\|147677191, gi... - gi\|98662654\|dbj\|GAA00479.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476771...	150.0	[0..72]	[222..48]
gi\|56910531, gi\|... - gi\|56964288\|ref\|YP_176019.1\| lytic transglycosylase [Bacillus clausii KSM-K16], gi\|56910531\|dbj\|BAD6...	150.0	[0..63]	[225..63]
MLTC_PHOLL - Membrane-bound lytic murein transglycosylase C OS=Photorhabdus luminescens subsp. laumondii (strain ... MLTC_PHOLL - Membrane-bound lytic murein transglycosylase C OS=Photorhabdus luminescens subsp. laumondii GN=mltC ...	149.0	[0..8]	[219..110]
gi\|196253527, gi... - gi\|196253527\|ref\|ZP_03152151.1\| Lytic transglycosylase catalytic [Clostridium thermocellum DSM 4150]... gi\|125715451, gi... - gi\|67876183\|ref\|ZP_00505142.1\| SLT domain [Clostridium thermocellum ATCC 27405], gi\|67850223\|gb\|EAM4...	149.0	[0..58]	[223..61]
gi\|56379203, gi\|... - gi\|56419361\|ref\|YP_146679.1\| lytic transglycosylase [Geobacillus kaustophilus HTA426], gi\|56379203\|d... gi\|229330353, gi... - gi\|229498781\|ref\|ZP_04392474.1\| Lytic transglycosylase catalytic [Geobacillus sp. Y412MC52], gi\|2293... gi\|220707727, gi... - gi\|221088375\|ref\|ZP_03557906.1\| Lytic transglycosylase catalytic [Geobacillus sp. Y412MC61], gi\|2207...	149.0	[0..50]	[223..32]
gi\|49531851, gi\|... - gi\|50085875\|ref\|YP_047385.1\| putative transglycosylase [Acinetobacter sp. ADP1], gi\|49531851\|emb\|CAG...	148.0	[0..85]	[224..70]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIFLQTAKI ELIDYKNGCD EVEINGLPQM MPFQIMSSLQ TSNSTDSLGV SFQQLLLEKI  60
   61 NEAERRTSLD FGSNLVSVPY KMQSPLNAID NSSITTNNSS VSAYQQLISN ASQKYGVDES 120
  121 LINAVIKHES NYNPNATSSA GAQGLMQLMP QTAAGLGVTN AYDPVQNINA GTKYLSQMLQ 180
  181 RYNGDNQLAL AAYNAGPGNV DKYQGIPPFR ETTAYVSKVM QSLQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1qsaA
Description:	70 KDa soluble lytic transglycosylase (SLT70), superhelical domain; 70 kDa soluble lytic transglycosylase, SLT70
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.05278554752845	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: