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View Structure Prediction Details

Protein: tr|G1T1X4|G1T1X4...
Organism: Oryctolagus cuniculus
Length: 683 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tr|G1T1X4|G1T1X4....

Description E-value Query
Range
Subject
Range
PRPF3_CHICK - U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus GN=PRPF3 PE=2 SV=1
0.0 [1..683] [1..684]
gi|62897209 - gi|62897209|dbj|BAD96545.1| PRP3 pre-mRNA processing factor 3 homolog [Homo sapiens]
0.0 [1..683] [1..683]
PRPF3_PONAB - U4/U6 small nuclear ribonucleoprotein Prp3 OS=Pongo abelii GN=PRPF3 PE=2 SV=1
gi|55732632 - gi|55732632|emb|CAH93015.1| hypothetical protein [Pongo abelii]
0.0 [1..683] [1..683]
gi|109016056 - gi|109016056|ref|XP_001101105.1| PREDICTED: PRP3 pre-mRNA processing factor 3 homolog isoform 3 [Mac...
0.0 [1..683] [1..683]
gi|74143287 - gi|74143287|dbj|BAE24161.1| unnamed protein product [Mus musculus]
0.0 [1..683] [1..683]
gi|73981311 - gi|73981311|ref|XP_860581.1| PREDICTED: similar to U4/U6 small nuclear ribonucleoprotein Prp3 (Pre-m...
0.0 [1..683] [1..685]
gi|109467179, gi... - gi|62643902|ref|XP_342296.2| PREDICTED: similar to PRP3 pre-mRNA processing factor 3 homolog [Rattus...
0.0 [1..683] [1..683]
PRPF3_BOVIN - U4/U6 small nuclear ribonucleoprotein Prp3 OS=Bos taurus GN=PRPF3 PE=2 SV=1
0.0 [1..683] [1..683]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSKRELDE LKPWIEKTVK RVLGFSEPTV VTAALNCVGK GMDKKKAADH LKPFLDDSTL  60
   61 RFVDKLFEAV EEGRSSRHSK SSSDRSR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.30103
Match: 1x4qA
Description: Solution structure of PWI domain in U4/U6 small nuclear ribonucleoprotein Prp3(hPrp3)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [88-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRELKEVFGD DSEISKESSG VKKRRIPRFE EVEEEPEVIP GPPSESPGML TKLQIKQMME  60
   61 AATRQIEERK KQLSFISPPT PQPKTPSSSQ PERLPIGNTI Q

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [189-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSQAATFMND AIEKARKAAE LQARIQAQLA LKPGLIGNAN MVGLANLHAM GIAPPKVELK  60
   61 DQTKPTPLIL DEQGRTVDAT GKEIELTHRM PTLKANIRAV KREQFKQQLK EKPSEDMESN 120
  121 TFFDPRVSIA PSQRQRRTFK FHDKGKFEKI AQRLRTKAQL EKLQAEISQA ARKTGIHTST 180
  181 RLA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [372-427]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIAPKKELKE GDIPEIEWWD SYIIPNGFDL TEENPKREDY FGITNLVEHP AQLNPP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [428-496]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDNDTPVTLG VYLTKKEQKK LRRQTRREAQ KELQEKVRLG LMPPPEPKVR ISNLMRVLGT  60
   61 EAVQDPTKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [497-683]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAHVRAQMAK RQKAHEEANA ARKLTAEQRK VKKIKKLKED ISQGVHISVY RVRNLSNPAK  60
   61 KFKIEANAGQ LYLTGVVVLH KDVNVVVVEG GPKAQKKFKR LMLHRIKWDE QTSNTKGDDD 120
  121 EESDEEAVKK TNKCVLVWEG TAKDRSFGEM KFKQCPTENM AREHFKKHGA EHYWDLALSE 180
  181 SVLESTD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.1
Match: 2iygA
Description: No description for 2iygA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle