YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22776718, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22776718, gi|....

Description	E-value	Query Range	Subject Range
gi\|49481067, gi\|... - gi\|49481067\|ref\|YP_035660.1\| methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27]...	184.0	[0..2]	[257..3]
gi\|89086416, gi\|... - gi\|89098740\|ref\|ZP_01171621.1\| methyltransferase [Bacillus sp. NRRL B-14911], gi\|89086416\|gb\|EAR6553...	166.0	[0..2]	[257..3]
gi\|56965762, gi\|... - gi\|56965762\|ref\|YP_177496.1\| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus clausi...	160.0	[0..2]	[257..1]
MENG_STAA1 - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=menG PE... MENG_STAAW - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MW2) GN=menG PE=3 SV=1 MENG_STAAE - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain Newman) GN=menG PE=3 SV=1 MENG_STAA9 - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain JH9) GN=menG PE=3 SV=1 gi\|269203096\|ref... - ubiquinone/menaquinone biosynthesis methyltransferase [Staphylococcus aureus subsp. aureus ED98] gi\|25304996 - pir\|\|G89925 menaquinone biosynthesis methyltransferase [imported] - Staphylococcus aureus (strain N3... MENG_STAAT - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=menG PE=... gi\|221140962 - gi\|221140962\|ref\|ZP_03565455.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Staphylococcu... MENG_STAAS - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=menG PE=3 SV=1 gi\|221138325 - gi\|221138325\|ref\|ZP_03563127.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Staphylococcu... MENG_STAAM - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=menG P... MENG_STAAN - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain N315) GN=menG PE=1 SV=1 gi\|251802063, gi... - gi\|251814398\|ref\|ZP_04828871.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Staphylococcu... gi\|253315978 - gi\|253315978\|ref\|ZP_04839191.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Staphylococcu... gi\|253732113, gi... - gi\|253732113\|ref\|ZP_04866278.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Staphylococcu... gi\|253728822, gi... - gi\|253733282\|ref\|ZP_04867447.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Staphylococcu... gi\|255006257 - gi\|255006257\|ref\|ZP_05144858.2\| ubiquinone/menaquinone biosynthesis methyltransferase [Staphylococcu... MENG_STAA2 - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain JH1) GN=menG PE=3 SV=1 MENG_STAAC - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain COL) GN=menG PE=3 SV=1	158.0	[0..7]	[194..22]
MENG_STAAB - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=menG...	156.0	[0..7]	[194..22]
MENG_STAAR - Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=menG PE=3 SV=1 gi\|227558277, gi... - gi\|227558277\|ref\|ZP_03988324.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Staphylococcu...	155.0	[0..7]	[194..22]
gi\|28436074 - gi\|28436074\|dbj\|BAC57432.1\| phosphoethanolamine N-methyltransferase [Suaeda japonica]	153.0	[0..23]	[258..274]
gi\|42780641, gi\|... - gi\|42780641\|ref\|NP_977888.1\| UbiE/COQ5 family methlytransferase [Bacillus cereus ATCC 10987], gi\|427...	153.0	[0..2]	[257..3]
gi\|47554181, gi\|... - gi\|47569110\|ref\|ZP_00239798.1\| SAM-dependent methyltransferase [Bacillus cereus G9241], gi\|47554181\|...	151.0	[0..2]	[257..3]
gi\|89208790, gi\|... - gi\|89208790\|ref\|ZP_01187277.1\| UbiE/COQ5 methyltransferase [Bacillus weihenstephanensis KBAB4], gi\|8... gi\|228651055, gi... - gi\|229132349\|ref\|ZP_04261203.1\| Methyltransferase, UbiE/COQ5 [Bacillus cereus BDRD-ST196], gi\|228651...	151.0	[0..2]	[257..3]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDFHSFENT NSYSNRNIDL TWVEKLQTFI GNPQQKTAVD MGCGGGLYTK VLADLGFKEI  60
   61 YGIDFSDAML TSASNNYHHL HQAQFLKGNA YNSGLESDSV DFYLQRAVLH HLTDPEAAFI 120
  121 EAARILRQEG IIYIQDRTME DCLIPGSTSH LRGYLYYDFP ELIEIEKQRR PTISETIGQL 180
  181 KTAGFTEIKQ MNLWEVRKHY ASFQELRKDI QSRKGRSILH ELSDAEIKLW IQKLENRLPN 240
  241 DTEIIEKDRW TIWIAHKKDS N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1kp9A
Description:	CmaA1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.27388514102581	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.11446137064593	bayes_pls_golite062009
methyltransferase activity	1.0967819849268	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.495483488913306	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: