YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22776480, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22776480, gi|....

Description	E-value	Query Range	Subject Range
gi\|42736382, gi\|... - gi\|42780463\|ref\|NP_977710.1\| signal peptidase I [Bacillus cereus ATCC 10987], gi\|42736382\|gb\|AAS4031... gi\|217958852, gi... - gi\|217958852\|ref\|YP_002337400.1\| signal peptidase I [Bacillus cereus AH187], gi\|217064637\|gb\|ACJ7888... gi\|206977838, gi... - gi\|206977838\|ref\|ZP_03238727.1\| signal peptidase I [Bacillus cereus H3081.97], gi\|206743935\|gb\|EDZ55...	162.0	[0..3]	[183..1]
gi\|49328730, gi\|... - gi\|49477174\|ref\|YP_035505.1\| signal peptidase I [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|164713792, gi... - gi\|165870297\|ref\|ZP_02214952.1\| signal peptidase I [Bacillus anthracis str. A0488], gi\|164713792\|gb\|... gi\|52144056, gi\|... - gi\|52144056\|ref\|YP_082771.1\| signal peptidase I [Bacillus cereus E33L], gi\|51977525\|gb\|AAU19075.1\| s... gi\|47526553, gi\|... - gi\|47526553\|ref\|YP_017902.1\| signal peptidase I [Bacillus anthracis str. 'Ames Ancestor'], gi\|475017... gi\|167512720, gi... - gi\|167639281\|ref\|ZP_02397553.1\| signal peptidase I [Bacillus anthracis str. A0193], gi\|167512720\|gb\|... gi\|49184209, gi\|... - gi\|49184209\|ref\|YP_027461.1\| signal peptidase I [Bacillus anthracis str. Sterne], gi\|49178136\|gb\|AAT... gi\|167634463, gi... - gi\|167634463\|ref\|ZP_02392784.1\| signal peptidase I [Bacillus anthracis str. A0442], gi\|167530351\|gb\|... gi\|227815883, gi... - gi\|227815883\|ref\|YP_002815892.1\| signal peptidase I [Bacillus anthracis str. CDC 684], gi\|227006845\|... gi\|228913947, gi... - gi\|228913947\|ref\|ZP_04077572.1\| Signal peptidase SipW; Serine peptidase; MEROPS family S26B [Bacillu... gi\|228662577, gi... - gi\|229120917\|ref\|ZP_04250159.1\| Signal peptidase SipW; Serine peptidase; MEROPS family S26B [Bacillu... gi\|229602909, gi... - gi\|229602909\|ref\|YP_002865797.1\| signal peptidase I [Bacillus anthracis str. A0248], gi\|229267317\|gb... gi\|254682563 - gi\|254682563\|ref\|ZP_05146424.1\| signal peptidase I [Bacillus anthracis str. CNEVA-9066] gi\|254726224 - gi\|254726224\|ref\|ZP_05188006.1\| signal peptidase I [Bacillus anthracis str. A1055] gi\|254733981 - gi\|254733981\|ref\|ZP_05191695.1\| signal peptidase I [Bacillus anthracis str. Western North America US... gi\|254740332 - gi\|254740332\|ref\|ZP_05198023.1\| signal peptidase I [Bacillus anthracis str. Kruger B] gi\|254753719 - gi\|254753719\|ref\|ZP_05205754.1\| signal peptidase I [Bacillus anthracis str. Vollum] gi\|254758815 - gi\|254758815\|ref\|ZP_05210842.1\| signal peptidase I [Bacillus anthracis str. Australia 94] gi\|65318645, gi\|... - gi\|65318645\|ref\|ZP_00391604.1\| COG0681: Signal peptidase I [Bacillus anthracis str. A2012], ref\|NP_6... gi\|170706210, gi... - gi\|170706210\|ref\|ZP_02896671.1\| signal peptidase I [Bacillus anthracis str. A0389], gi\|170128744\|gb\|... gi\|30261381, gi\|... - gi\|30261381\|ref\|NP_843758.1\| signal peptidase I [Bacillus anthracis str. Ames], gi\|30255235\|gb\|AAP25... gi\|170686813, gi... - gi\|170686813\|ref\|ZP_02878033.1\| signal peptidase I [Bacillus anthracis str. A0465], gi\|170669336\|gb\|... gi\|190560167, gi... - gi\|190568751\|ref\|ZP_03021655.1\| signal peptidase I [Bacillus anthracis Tsiankovskii-I], gi\|190560167... gi\|177651606, gi... - gi\|177651606\|ref\|ZP_02934395.1\| signal peptidase I [Bacillus anthracis str. A0174], gi\|172082884\|gb\|... gi\|218535317, gi... - gi\|218902484\|ref\|YP_002450318.1\| signal peptidase I [Bacillus cereus AH820], gi\|218535317\|gb\|ACK8771... gi\|196035344, gi... - gi\|196035344\|ref\|ZP_03102749.1\| signal peptidase I [Bacillus cereus W], gi\|195992021\|gb\|EDX55984.1\| ...	161.0	[0..3]	[183..1]
gi\|47556713, gi\|... - gi\|47566160\|ref\|ZP_00237188.1\| signal sequence peptidase [Bacillus cereus G9241], gi\|47556713\|gb\|EAL...	159.0	[0..3]	[183..1]
gi\|29894973, gi\|... - gi\|30019429\|ref\|NP_831060.1\| Signal peptidase I [Bacillus cereus ATCC 14579], gi\|29894973\|gb\|AAP0826... gi\|206967902, gi... - gi\|206967902\|ref\|ZP_03228858.1\| signal peptidase I [Bacillus cereus AH1134], gi\|206736822\|gb\|EDZ5396...	159.0	[0..3]	[183..1]
gi\|25494695 - pir\|\|B83916 signal peptidase (type I) sipW [imported] - Bacillus halodurans (strain C-125) gi\|15614693, gi\|... - gi\|15614693\|ref\|NP_242996.1\| signal peptidase (type I) [Bacillus halodurans C-125], gi\|10174749\|dbj\|...	157.0	[0..2]	[183..1]
gi\|228750629, gi... - gi\|229010664\|ref\|ZP_04167864.1\| Signal peptidase SipW; Serine peptidase; MEROPS family S26B [Bacillu... gi\|229057006, gi... - gi\|229057006\|ref\|ZP_04196400.1\| Signal peptidase SipW; Serine peptidase; MEROPS family S26B [Bacillu... gi\|89157559, gi\|... - gi\|89204498\|ref\|ZP_01183075.1\| Peptidase S26B, eukaryotic signal peptidase [Bacillus weihenstephanen...	156.0	[0..3]	[183..1]
gi\|6048416 - gi\|6048416\|gb\|AAF02220.1\|AF085497_1 signal peptidase type I [Bacillus amyloliquefaciens]	156.0	[0..3]	[185..1]
gi\|152023555, gi... - gi\|89200953\|ref\|ZP_01179702.1\| Peptidase S26B, eukaryotic signal peptidase [Bacillus cereus subsp. c...	154.0	[0..3]	[184..1]
LEPW_BACSU - Signal peptidase I W OS=Bacillus subtilis (strain 168) GN=sipW PE=1 SV=1 gi\|221323909 - gi\|221323909\|ref\|ZP_03605203.1\| type I signal peptidase [Bacillus subtilis subsp. subtilis str. SMY] LEPW_BACSU - Signal peptidase I W OS=Bacillus subtilis GN=sipW PE=1 SV=1	151.0	[0..8]	[184..2]
gi\|23098756, gi\|... - gi\|23098756\|ref\|NP_692222.1\| signal peptidase I [Oceanobacillus iheyensis HTE831], gi\|22776983\|dbj\|B...	146.0	[0..4]	[184..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMWRSMKKLT SGLITTVLSM LLIVTVFTVI LQQATDGTPN VFGYQLKTVL SGSMEPEFQT  60
   61 GSIISIHPQE DTTQFQKGDI ITFQNSDGMV ITHRVEEVKN NGEQYVTKGD NNNRADSELV 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.09691
Match:	1t7dA
Description:	Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [121-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VADSILGQYT GFTIPYVGYA TQFANSEEGA LFLLIIPGVM LVGYSIINIG RALRQVETSS  60
   61 KEKTEVSNHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.951
Match:	2a0lA
Description:	Crystal structure of KvAP-33H1 Fv complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits