YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23097990, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23097990, gi|....

Description	E-value	Query Range	Subject Range
gi\|56963875, gi\|... - gi\|56963875\|ref\|YP_175606.1\| oxidoreductase [Bacillus clausii KSM-K16], gi\|56910118\|dbj\|BAD64645.1\| ...	336.0	[0..1]	[274..1]
gi\|68055006, gi\|... - gi\|68055006\|ref\|ZP_00539155.1\| 2,5-didehydrogluconate reductase [Exiguobacterium sibiricum 255-15], ...	336.0	[0..1]	[274..1]
gi\|56378939, gi\|... - gi\|56419097\|ref\|YP_146415.1\| plant-metabolite dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56...	323.0	[0..5]	[272..9]
gi\|29828391, gi\|... - gi\|29828391\|ref\|NP_823025.1\| oxidoreductase [Streptomyces avermitilis MA-4680], gi\|29605494\|dbj\|BAC6...	320.0	[0..4]	[273..8]
gi\|89097650, gi\|... - gi\|89097650\|ref\|ZP_01170538.1\| YvgN [Bacillus sp. NRRL B-14911], gi\|89087509\|gb\|EAR66622.1\| YvgN [Ba...	311.0	[0..2]	[272..7]
gi\|48870271, gi\|... - gi\|48870271\|ref\|ZP_00322996.1\| COG0656: Aldo/keto reductases, related to diketogulonate reductase [P...	308.0	[0..2]	[270..6]
gi\|7481096 - pir\|\|T34993 probable oxidoreductase - Streptomyces coelicolor gi\|4007669, gi\|2... - gi\|4007669\|emb\|CAA22355.1\| putative oxidoreductase [Streptomyces coelicolor A3(2)], gi\|21224853\|ref\|...	308.0	[0..4]	[272..8]
gi\|89200742, gi\|... - gi\|89200742\|ref\|ZP_01179492.1\| 2,5-didehydrogluconate reductase [Bacillus cereus subsp. cytotoxis NV...	307.0	[0..3]	[269..5]
gi\|165871533, gi... - gi\|165871533\|ref\|ZP_02216179.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|228931697, gi... - gi\|228931697\|ref\|ZP_04094602.1\| YtbE (Aldo/keto reductase YtbE) [Bacillus thuringiensis serovar anda... gi\|167530510, gi... - gi\|167634196\|ref\|ZP_02392518.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|227812869, gi... - gi\|227812869\|ref\|YP_002812878.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str.... gi\|167511749, gi... - gi\|167640347\|ref\|ZP_02398612.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|170668284, gi... - gi\|170687757\|ref\|ZP_02878972.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|47500602, gi\|... - gi\|47525454\|ref\|YP_016803.1\| aldo/keto reductase family oxidoreductase [Bacillus anthracis str. 'Ame... gi\|170707850, gi... - gi\|170707850\|ref\|ZP_02898300.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|30253703, gi\|... - gi\|30260382\|ref\|NP_842759.1\| aldo/keto reductase family oxidoreductase [Bacillus anthracis str. Ames... gi\|172081423, gi... - gi\|177653383\|ref\|ZP_02935593.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str. ... gi\|65317637, gi\|... - gi\|65317637\|ref\|ZP_00390596.1\| COG0656: Aldo/keto reductases, related to diketogulonate reductase [B... gi\|190561558, gi... - gi\|190567431\|ref\|ZP_03020345.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis Tsian... gi\|218901397, gi... - gi\|218901397\|ref\|YP_002449231.1\| oxidoreductase, aldo/keto reductase family [Bacillus cereus AH820],... gi\|254756908 - gi\|254756908\|ref\|ZP_05208936.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|254754860 - gi\|254754860\|ref\|ZP_05206895.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|254739764 - gi\|254739764\|ref\|ZP_05197457.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|49183230, gi\|... - gi\|49183230\|ref\|YP_026482.1\| aldo/keto reductase family oxidoreductase [Bacillus anthracis str. Ster... gi\|254734982 - gi\|254734982\|ref\|ZP_05192694.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|254723618 - gi\|254723618\|ref\|ZP_05185405.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|254686541 - gi\|254686541\|ref\|ZP_05150400.1\| oxidoreductase, aldo/keto reductase family protein [Bacillus anthrac... gi\|229268007, gi... - gi\|229603599\|ref\|YP_002864838.1\| oxidoreductase, aldo/keto reductase family [Bacillus anthracis str.... gi\|229119857, gi... - gi\|229119857\|ref\|ZP_04249117.1\| YtbE (Aldo/keto reductase YtbE) [Bacillus cereus 95/8201], gi\|228663...	307.0	[0..2]	[272..8]
gi\|65321490 - gi\|65321490\|ref\|ZP_00394449.1\| COG0656: Aldo/keto reductases, related to diketogulonate reductase [B...	306.0	[0..3]	[269..27]

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Predicted Domain #1

Region A:
Residues: [1-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYVTLNNGL KMPQLGFGVW KVPNEEVVSP VEHALKVGYR SIDTAKVYGN EVGVGEAISN  60
   61 SGIPREQLFI TTKVWNSDHG YDNTLKAFDE SLERLGLDYV DLYLIHWPTP EFDQYVETYK 120
  121 ALETLYKDGK VKAIGVCNFD IEYLERILNE CEIVPVLNQV ECHPYLQQKE LRDFCEKHNI 180
  181 YLESYSPLMN GKEVLQSEEL QNLAERKGKT VAQTILRWHL QSGMIVIPKS VTPNRIEENL 240
  241 DVFDFELTDT EMQEINELDR NLRSGAVPSE MNVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.39794
Match:	1vbjA
Description:	The crystal structure of prostaglandin F synthase from Trypanosoma brucei
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits