YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23097824, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23097824, gi|....

Description	E-value	Query Range	Subject Range
gi\|56420550, gi\|... - gi\|56420550\|ref\|YP_147868.1\| transcriptional regulator [Geobacillus kaustophilus HTA426], gi\|5638039...	167.0	[0..1]	[231..12]
gi\|39983607, gi\|... - gi\|39996726\|ref\|NP_952677.1\| GntR family transcriptional regulator [Geobacter sulfurreducens PCA], g...	164.0	[0..1]	[229..1]
gi\|134300032, gi... - gi\|88945079\|ref\|ZP_01148299.1\| regulatory protein GntR, HTH [Desulfotomaculum reducens MI-1], gi\|889...	162.0	[0..1]	[233..1]
gi\|27367455, gi\|... - gi\|27367455\|ref\|NP_762982.1\| transcriptional regulator [Vibrio vulnificus CMCP6], gi\|27359024\|gb\|AAO... gi\|37201794, gi\|... - gi\|37677249\|ref\|NP_937645.1\| transcriptional regulator [Vibrio vulnificus YJ016], gi\|37201794\|dbj\|BA...	160.0	[0..1]	[236..10]
gi\|89048199, gi\|... - gi\|89076123\|ref\|ZP_01162482.1\| putative transcriptional regulatory protein [Photobacterium sp. SKA34...	159.0	[0..1]	[236..10]
gi\|89334469, gi\|... - gi\|89895021\|ref\|YP_518508.1\| hypothetical protein DSY2275 [Desulfitobacterium hafniense Y51], gi\|893...	159.0	[0..1]	[233..5]
gi\|219669424, gi... - gi\|219669424\|ref\|YP_002459859.1\| GntR domain protein [Desulfitobacterium hafniense DCB-2], gi\|219539...	158.0	[0..1]	[233..1]
gi\|78044814, gi\|... - gi\|78044814\|ref\|YP_359295.1\| GntR family transcriptional regulator [Carboxydothermus hydrogenoforman...	158.0	[0..1]	[232..1]
gi\|28810103, gi\|... - gi\|28901556\|ref\|NP_801211.1\| putative transcriptional regulatory protein [Vibrio parahaemolyticus RI... gi\|28810103 - gi\|28810103\|dbj\|BAC63044.1\| putative transcriptional regulatory protein [Vibrio parahaemolyticus RIM...	157.0	[0..1]	[236..10]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYKRIKSKK IYEQVADSLI DMIKQGRIQP GDKLDSVEQL AQNFGVGRSA IREALSGLRS  60
   61 MGLVEMRQGE GTFINTFNPK RFTLPVSTAF LMKQDDVKEL YQVRKILEGG TARYAATSYE 120
  121 QADLEKMEKT LNIMKNAKGD DVLAEQADTE FHLAIAQATH MDLLIHLMGS VSDLMSETIR 180
  181 ETRQILLYSE DRADALYDEH DRIYQAIKNR QPNEARDAMY DHLEKVEMLL FKNLDM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	2di3A
Description:	No description for 2di3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits