YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23097697, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23097697, gi|....

Description	E-value	Query Range	Subject Range
gi\|34496373, gi\|... - gi\|34496373\|ref\|NP_900588.1\| C4-dicarboxylate transport system, permease small subunit [Chromobacter...	142.0	[0..3]	[172..1]
gi\|37679281, gi\|... - gi\|37679281\|ref\|NP_933890.1\| TRAP-type C4-dicarboxylate transport system, small permease component [...	139.0	[0..2]	[168..13]
gi\|27359634, gi\|... - gi\|27363518\|ref\|NP_759046.1\| TRAP-type C4-dicarboxylate transport system, small permease component [...	139.0	[0..2]	[168..13]
gi\|84387729, gi\|... - gi\|84387729\|ref\|ZP_00990745.1\| putative C4-dicarboxylate transport protein DctQ [Vibrio splendidus 1...	136.0	[0..2]	[168..23]
gi\|86147631, gi\|... - gi\|86147631\|ref\|ZP_01065940.1\| putative C4-dicarboxylate transport protein DctQ [Vibrio sp. MED222],...	135.0	[0..2]	[168..23]
gi\|152964166, gi... - gi\|69289865\|ref\|ZP_00618875.1\| Tripartite ATP-independent periplasmic transporter, DctQ component [K...	132.0	[0..5]	[166..30]
gi\|71908605, gi\|... - gi\|71908605\|ref\|YP_286192.1\| tripartite ATP-independent periplasmic transporter DctQ [Dechloromonas ...	131.0	[0..3]	[173..2]
gi\|83309993, gi\|... - gi\|83309993\|ref\|YP_420257.1\| TRAP-type C4-dicarboxylate transport system [Magnetospirillum magneticu...	130.0	[0..3]	[173..1]
gi\|91188385, gi\|... - gi\|91227738\|ref\|ZP_01261965.1\| putative C4-dicarboxylate transport protein DctQ [Vibrio alginolyticu...	129.0	[0..2]	[168..8]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNKLLNNL EEYSAVISLL IASLLVFLQV VLRYVFNISL VWSEEVSRYI IIWFVLVGSS  60
   61 IAVREKAHAT VDAVVTYLPY ILKRICSIFA SFIGMTFSVI LIWSGSVTVS NVIEFGNVTP 120
  121 AVGIPMSIPY LALPVGGLLM FIRFLQLLIQ DVTNMRKNDP NKKPPIIEGG IKE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.267606
Match:	PF04290.3
Description:	No description for PF04290.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits