YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23097653, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23097653, gi|....

Description	E-value	Query Range	Subject Range
gi\|118415141, gi... - gi\|118475916\|ref\|YP_893067.1\| kinB signaling pathway activation protein [Bacillus thuringiensis str.... gi\|254686648 - gi\|254686648\|ref\|ZP_05150507.1\| kinb signaling pathway activation protein [Bacillus anthracis str. C... gi\|229604123, gi... - gi\|229604123\|ref\|YP_002864800.1\| kinb signaling pathway activation protein [Bacillus anthracis str. ... gi\|228931651, gi... - gi\|228931651\|ref\|ZP_04094557.1\| KinB-signaling pathway activation protein [Bacillus thuringiensis se... gi\|227812822, gi... - gi\|227812822\|ref\|YP_002812831.1\| kinb signaling pathway activation protein [Bacillus anthracis str. ... gi\|49177110, gi\|... - gi\|49183183\|ref\|YP_026435.1\| kinb signaling pathway activation protein [Bacillus anthracis str. Ster... gi\|196041073, gi... - gi\|196041073\|ref\|ZP_03108369.1\| kinb signaling pathway activation protein [Bacillus cereus NVH0597-9... gi\|254755523 - gi\|254755523\|ref\|ZP_05207557.1\| kinb signaling pathway activation protein [Bacillus anthracis str. V... gi\|47500553, gi\|... - gi\|47525405\|ref\|YP_016754.1\| kinb signaling pathway activation protein [Bacillus anthracis str. 'Ame... gi\|218538145, gi... - gi\|218901354\|ref\|YP_002449188.1\| kinb signaling pathway activation protein [Bacillus cereus AH820], ... gi\|254739469 - gi\|254739469\|ref\|ZP_05197167.1\| kinb signaling pathway activation protein [Bacillus anthracis str. K... gi\|30253660, gi\|... - gi\|30260339\|ref\|NP_842716.1\| kinb signaling pathway activation protein [Bacillus anthracis str. Ames... gi\|190567455, gi... - gi\|190567455\|ref\|ZP_03020369.1\| kinb signaling pathway activation protein [Bacillus anthracis Tsiank... gi\|254735277 - gi\|254735277\|ref\|ZP_05192985.1\| kinb signaling pathway activation protein [Bacillus anthracis str. W... gi\|196036056, gi... - gi\|196036056\|ref\|ZP_03103457.1\| kinb signaling pathway activation protein [Bacillus cereus W], gi\|19... gi\|254726272 - gi\|254726272\|ref\|ZP_05188054.1\| kinb signaling pathway activation protein [Bacillus anthracis str. A... gi\|170125677, gi... - gi\|170709422\|ref\|ZP_02899831.1\| kinb signaling pathway activation protein [Bacillus anthracis str. A... gi\|172079848, gi... - gi\|177656163\|ref\|ZP_02937166.1\| kinb signaling pathway activation protein [Bacillus anthracis str. A... gi\|167642045, gi... - gi\|167642045\|ref\|ZP_02400273.1\| kinb signaling pathway activation protein [Bacillus anthracis str. A... gi\|49479223, gi\|... - gi\|49479223\|ref\|YP_034500.1\| kinB signaling pathway activation protein [Bacillus thuringiensis serov... gi\|170689693, gi... - gi\|170689693\|ref\|ZP_02880871.1\| kinb signaling pathway activation protein [Bacillus anthracis str. A... gi\|254756829 - gi\|254756829\|ref\|ZP_05208857.1\| kinb signaling pathway activation protein [Bacillus anthracis str. A... gi\|167527851, gi... - gi\|167636719\|ref\|ZP_02395004.1\| kinb signaling pathway activation protein [Bacillus anthracis str. A...	245.0	[0..1]	[191..1]
gi\|228983404, gi... - gi\|228983404\|ref\|ZP_04143617.1\| KinB-signaling pathway activation protein [Bacillus thuringiensis se... gi\|47570261, gi\|... - gi\|47570261\|ref\|ZP_00240912.1\| KINB signaling pathway activation protein [Bacillus cereus G9241], gi...	245.0	[0..1]	[191..1]
gi\|42779230, gi\|... - gi\|42779230\|ref\|NP_976477.1\| kinb signaling pathway activation protein [Bacillus cereus ATCC 10987],...	245.0	[0..1]	[191..1]
gi\|52145067, gi\|... - gi\|52145067\|ref\|YP_081759.1\| kinB signaling pathway activation protein [Bacillus cereus E33L], gi\|51...	245.0	[0..1]	[191..1]
gi\|29893958, gi\|... - gi\|30018418\|ref\|NP_830049.1\| KINB signaling pathway activation protein [Bacillus cereus ATCC 14579],... gi\|228956590, gi... - gi\|228956590\|ref\|ZP_04118386.1\| KinB-signaling pathway activation protein [Bacillus thuringiensis se... gi\|228634974, gi... - gi\|229148558\|ref\|ZP_04276814.1\| KinB-signaling pathway activation protein [Bacillus cereus m1550], g... gi\|228657858, gi... - gi\|229125666\|ref\|ZP_04254698.1\| KinB-signaling pathway activation protein [Bacillus cereus BDRD-Cer4... gi\|229107835, gi... - gi\|229107835\|ref\|ZP_04237471.1\| KinB-signaling pathway activation protein [Bacillus cereus Rock1-15]...	242.0	[0..1]	[191..1]
gi\|89153245, gi\|... - gi\|89208836\|ref\|ZP_01187320.1\| KinB signaling pathway activation protein [Bacillus weihenstephanensi...	240.0	[0..1]	[195..1]
gi\|89203689, gi\|... - gi\|89203689\|ref\|ZP_01182297.1\| KinB signaling pathway activation protein [Bacillus cereus subsp. cyt...	236.0	[0..1]	[195..1]
gi\|25369854 - pir\|\|B83680 kinB sporulation signaling pathway activator kbaA [similarity] - Bacillus halodurans (st... gi\|15612805, gi\|... - gi\|15612805\|ref\|NP_241108.1\| activation of the KinB signalling pathway of sporulation [Bacillus halo...	233.0	[0..1]	[194..1]
gi\|7007435 - gi\|7007435\|dbj\|BAA90850.1\| KbaA [Bacillus halodurans]	231.0	[0..1]	[194..1]
KBAA_BACSU - KinB-signaling pathway activation protein OS=Bacillus subtilis (strain 168) GN=kbaA PE=4 SV=2 gi\|221317224 - gi\|221317224\|ref\|ZP_03598518.1\| activation of the KinB signaling pathway to sporulation [Bacillus su... gi\|221312290 - gi\|221312290\|ref\|ZP_03594095.1\| activation of the KinB signaling pathway to sporulation [Bacillus su... KBAA_BACSU - KinB-signaling pathway activation protein OS=Bacillus subtilis GN=kbaA PE=4 SV=2 gi\|221321487 - gi\|221321487\|ref\|ZP_03602781.1\| activation of the KinB signaling pathway to sporulation [Bacillus su...	224.0	[0..1]	[188..1]

Back

Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTRILVGFL WKTFWLGGLA GLIASFFVKP EQYLNYLQPF DGMEILGLIL FFLVLGLTFA  60
   61 MVSLTGFFAY LFVHRMGLNL FKGYWSTVQI ALIIFILFDI IYFPYQSAN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [110-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVALYWFILL AAAILLIGWI VAKLKSKETN KKAFVPTLFF MVVFTTVEWV PGLMVDGTDY  60
   61 AWLMVVPLLV SNTYQILNLH RLNFQEKTPV QEAKQKKKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits