YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21648316, gi\|...
Organism:	Chlorobium tepidum TLS
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21648316, gi|....

Description	E-value	Query Range	Subject Range
gi\|20808973, gi\|... - gi\|20808973\|ref\|NP_624144.1\| hypothetical protein TTE2628 [Thermoanaerobacter tengcongensis MB4], gi... gi\|20808973 - gi\|20808973\|ref\|NP_624144.1\| uncharacterized ACR, predicted metal-dependent hydrolase [Thermoanaerob...	250.0	[0..1]	[211..1]
gi\|28211473, gi\|... - gi\|28211473\|ref\|NP_782417.1\| hypothetical protein CTC01833 [Clostridium tetani E88], gi\|28203914\|gb\|...	231.0	[0..1]	[211..1]
gi\|42735457, gi\|... - gi\|42779541\|ref\|NP_976788.1\| hypothetical protein BCE_0461 [Bacillus cereus ATCC 10987], gi\|42735457...	229.0	[0..1]	[211..1]
gi\|89204741, gi\|... - gi\|89204741\|ref\|ZP_01183317.1\| Putative cyclase [Bacillus weihenstephanensis KBAB4], gi\|89157368\|gb\|...	229.0	[0..1]	[211..1]
gi\|47569419, gi\|... - gi\|47569419\|ref\|ZP_00240101.1\| metal-dependent hydrolase [Bacillus cereus G9241], gi\|47553927\|gb\|EAL...	228.0	[0..1]	[211..26]
gi\|52144887, gi\|... - gi\|52144887\|ref\|YP_081941.1\| cyclase [Bacillus cereus E33L], gi\|51978356\|gb\|AAU19906.1\| conserved hy... gi\|49331606, gi\|... - gi\|49480050\|ref\|YP_034679.1\| cyclase [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|49331...	228.0	[0..1]	[211..1]
gi\|172081224, gi... - gi\|177653644\|ref\|ZP_02935783.1\| putative cyclase [Bacillus anthracis str. A0174], gi\|172081224\|gb\|ED... gi\|254686749 - gi\|254686749\|ref\|ZP_05150607.1\| putative cyclase [Bacillus anthracis str. CNEVA-9066] gi\|170708929, gi... - gi\|170708929\|ref\|ZP_02899362.1\| putative cyclase [Bacillus anthracis str. A0389], gi\|170126162\|gb\|ED... gi\|229604815, gi... - gi\|229604815\|ref\|YP_002864975.1\| putative cyclase [Bacillus anthracis str. A0248], gi\|229269223\|gb\|A... gi\|170688327, gi... - gi\|170688327\|ref\|ZP_02879536.1\| putative cyclase [Bacillus anthracis str. A0465], gi\|170667659\|gb\|ED... gi\|228827832, gi... - gi\|228931852\|ref\|ZP_04094748.1\| Metal-dependent hydrolase [Bacillus thuringiensis serovar andalousie... gi\|167640161, gi... - gi\|167640161\|ref\|ZP_02398428.1\| putative cyclase [Bacillus anthracis str. A0193], gi\|167511972\|gb\|ED... gi\|228846503, gi... - gi\|228913098\|ref\|ZP_04076737.1\| Metal-dependent hydrolase [Bacillus thuringiensis serovar pulsiensis... gi\|167634078, gi... - gi\|167634078\|ref\|ZP_02392400.1\| putative cyclase [Bacillus anthracis str. A0442], gi\|167530392\|gb\|ED... gi\|254756128 - gi\|254756128\|ref\|ZP_05208157.1\| putative cyclase [Bacillus anthracis str. Vollum] gi\|165871390, gi... - gi\|165871390\|ref\|ZP_02216038.1\| putative cyclase [Bacillus anthracis str. A0488], gi\|164712874\|gb\|ED... gi\|254740752 - gi\|254740752\|ref\|ZP_05198442.1\| putative cyclase [Bacillus anthracis str. Kruger B] gi\|254739027 - gi\|254739027\|ref\|ZP_05196729.1\| putative cyclase [Bacillus anthracis str. Western North America USA6... gi\|254724825 - gi\|254724825\|ref\|ZP_05186608.1\| putative cyclase [Bacillus anthracis str. A1055] gi\|254761946 - gi\|254761946\|ref\|ZP_05213795.1\| putative cyclase [Bacillus anthracis str. Australia 94] gi\|49183374, gi\|... - gi\|49183374\|ref\|YP_026626.1\| hypothetical protein BAS0346 [Bacillus anthracis str. Sterne], gi\|49177... gi\|227005587, gi... - gi\|227813028\|ref\|YP_002813037.1\| putative cyclase [Bacillus anthracis str. CDC 684], gi\|227005587\|gb... gi\|47500779, gi\|... - gi\|47525631\|ref\|YP_016980.1\| hypothetical protein GBAA0361 [Bacillus anthracis str. 'Ames Ancestor']... gi\|30260529, gi\|... - gi\|30260529\|ref\|NP_842906.1\| hypothetical protein BA0361 [Bacillus anthracis str. Ames], gi\|30253897... gi\|196034649, gi... - gi\|196034649\|ref\|ZP_03102057.1\| putative cyclase [Bacillus cereus W], gi\|195992692\|gb\|EDX56652.1\| pu... gi\|190567565, gi... - gi\|190567565\|ref\|ZP_03020478.1\| putative cyclase [Bacillus anthracis Tsiankovskii-I], gi\|190561352\|g...	227.0	[0..1]	[211..1]
gi\|30018603, gi\|... - gi\|30018603\|ref\|NP_830234.1\| metal-dependent hydrolase [Bacillus cereus ATCC 14579], gi\|29894144\|gb\|...	227.0	[0..1]	[211..1]
gi\|65317786 - gi\|65317786\|ref\|ZP_00390745.1\| COG1878: Predicted metal-dependent hydrolase [Bacillus anthracis str....	226.0	[0..1]	[211..18]
gi\|194312825, gi... - gi\|68552767\|ref\|ZP_00592153.1\| Putative cyclase [Prosthecochloris aestuarii DSM 271], gi\|68240390\|gb...	223.0	[0..3]	[211..11]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIVDLSYPV TADMPLWPGT PAPNFSDLHT VGRDGFGERW LQLSSHTGTH LDAPAHLFEG  60
   61 AVSLDRLPVD HFIGKGALLD LRDAQPEPLS LDQLLLQRAT IESAEFLLLH TGWSRFWGTA 120
  121 AYDRGYPVFA EEAAAWLAGL GLKGVGIDAP SFDDPDSEEL PIHRRLLGAG FVLIENLTAL 180
  181 DRLGGHEFFL SVLPLPIAGA EACPVRAVAL IASFAANQPI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.221849
Match:	1r61A
Description:	The structure of predicted metal-dependent hydrolase from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.735352182450617	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: