YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21647863, gi\|...
Organism:	Chlorobium tepidum TLS
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21647863, gi|....

Description	E-value	Query Range	Subject Range
gi\|20807045, gi\|... - gi\|20807045\|ref\|NP_622216.1\| 3-hydroxybutyryl-CoA dehydratase [Thermoanaerobacter tengcongensis MB4]... gi\|20807045 - gi\|20807045\|ref\|NP_622216.1\| enoyl-CoA hydratase [Thermoanaerobacter tengcongensis MB4]	286.0	[0..35]	[286..6]
gi\|68548715, gi\|... - gi\|68548715\|ref\|ZP_00588184.1\| Naphthoate synthase [Pelodictyon phaeoclathratiforme BU-1], gi\|682442...	284.0	[0..20]	[293..1]
gi\|189496438, gi... - gi\|67938338\|ref\|ZP_00530865.1\| Naphthoate synthase [Chlorobium phaeobacteroides BS1], gi\|67915446\|gb...	283.0	[0..20]	[293..1]
gi\|46446698, gi\|... - gi\|46446698\|ref\|YP_008063.1\| naphthoate synthase [Candidatus Protochlamydia amoebophila UWE25], gi\|4...	283.0	[0..21]	[293..3]
gi\|56381250, gi\|... - gi\|56421408\|ref\|YP_148726.1\| naphthoate synthase [Geobacillus kaustophilus HTA426], gi\|56381250\|dbj\|... gi\|229499009, gi... - gi\|229499009\|ref\|ZP_04392700.1\| naphthoate synthase [Geobacillus sp. Y412MC52], gi\|229330165\|gb\|EEN9... gi\|158428757, gi... - gi\|158428759\|pdb\|2IEX\|C Chain C, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) Fro... gi\|221088543, gi... - gi\|221088543\|ref\|ZP_03558072.1\| naphthoate synthase [Geobacillus sp. Y412MC61], gi\|220707477\|gb\|EED6...	283.0	[0..22]	[293..2]
gi\|23099778, gi\|... - gi\|23099778\|ref\|NP_693244.1\| naphthoate synthase [Oceanobacillus iheyensis HTE831], gi\|22778008\|dbj\|...	280.0	[0..22]	[293..2]
gi\|18145966, gi\|... - gi\|18311283\|ref\|NP_563217.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens str. 13], gi\|... gi\|110673862, gi... - gi\|110799215\|ref\|YP_696975.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens ATCC 13124],... gi\|182625533, gi... - gi\|182625533\|ref\|ZP_02953304.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens D str. JGS... gi\|170715197, gi... - gi\|170715197\|gb\|EDT27379.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens CPE str. F4969...	280.0	[0..35]	[286..6]
gi\|88926146, gi\|... - gi\|88944140\|ref\|ZP_01147473.1\| putative crotonase [Desulfotomaculum reducens MI-1], gi\|88926146\|gb\|E...	279.0	[0..33]	[287..4]
gi\|68241486, gi\|... - gi\|68551552\|ref\|ZP_00590947.1\| Naphthoate synthase [Prosthecochloris aestuarii DSM 271], gi\|68241486...	279.0	[0..20]	[293..1]
gi\|110683900, gi... - gi\|110803399\|ref\|YP_699562.1\| 3-hydroxybutyryl-CoA dehydratase [Clostridium perfringens SM101], gi\|1...	278.0	[0..35]	[286..6]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVEPGQRRF SSTTIEISDM STVNWITAGE YSDILYHKTE EGIAKITINR PERRNAFRPQ  60
   61 TVDQMIEALQ DARNDSQIGV IILTGAGDLA FCSGGDQKIR GNAGYADEKG VNKLNVLDFQ 120
  121 RDIRTCPKPI IAMVAGYAIG GGHVLHMLCD LTIAAENARF GQTGPRVGSF DGGWGASYMA 180
  181 RLVGQKKARE IWYLCRQYNA QEALDMGLVN TVVPLEKLEE ETIQWCREIL ANSPLAIRCL 240
  241 KAALNADCDG QAGLQELAGN ATLLYYMSEE GQEGRNAFVE KRKPDFSKFP KRP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.30103
Match:	2iexA
Description:	No description for 2iexA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits