YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21647505, gi\|...
Organism:	Chlorobium tepidum TLS
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21647505, gi|....

Description	E-value	Query Range	Subject Range
gi\|67935681, gi\|... - gi\|67935681\|ref\|ZP_00528700.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Chl...	304.0	[0..1]	[290..66]
gi\|67918649, gi\|... - gi\|67918649\|ref\|ZP_00512244.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Chl...	300.0	[0..1]	[291..1]
gi\|68240182, gi\|... - gi\|68552893\|ref\|ZP_00592277.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Pro...	297.0	[0..1]	[290..1]
gi\|194308610, gi... - gi\|68551060\|ref\|ZP_00590489.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Pel...	295.0	[0..1]	[291..1]
gi\|110340658, gi... - gi\|110597751\|ref\|ZP_01386035.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Ch...	293.0	[0..1]	[291..55]
gi\|106890750, gi... - gi\|148656858\|ref\|YP_001277063.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [R...	292.0	[0..3]	[291..2]
gi\|114320600, gi... - gi\|78700084\|ref\|ZP_00864541.1\| glycosyl hydrolase, family 10 [Alkalilimnicola ehrlichei MLHE-1], gi\|...	290.0	[0..5]	[290..3]
gi\|163848837, gi... - gi\|76259922\|ref\|ZP_00767565.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Chl... gi\|53795239 - ref\|ZP_00356329.1\| COG0388: Predicted amidohydrolase [Chloroflexus aurantiacus]	290.0	[0..1]	[291..7]
gi\|71729781, gi\|... - gi\|71900475\|ref\|ZP_00682606.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Xyl...	289.0	[0..1]	[290..1]
gi\|28057448, gi\|... - gi\|28199342\|ref\|NP_779656.1\| pantothenase [Xylella fastidiosa Temecula1], gi\|28057448\|gb\|AAO29305.1\|... gi\|182632177, gi... - gi\|182682067\|ref\|YP_001830227.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [X...	289.0	[0..1]	[290..1]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTDQVRIAL VQMSCVENPQ ENLRKAQERI RQAAAGGANI VCLQELFTTL YFCQTEEYEP  60
   61 FGYAEPIPGP STAALQELAA ELGVVIVASL FEIRAKGVHH NTAAVIDADG SYLGKYRKMH 120
  121 IPDDPGFYEK FYFVPGDLGY KVFDTKFGTI GVLICWDQWY PEAARLTALR GADILFYPTA 180
  181 IGWATSETSQ EVRASQRQAW KTSHLGHAVA NGVFVAAANR AGTEGELEFW GNSFVSDPFG 240
  241 QVIAEAAHNS EEILYADCDL SKIGFYRSHW PFMRDRRIDS YGDITRRWID E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.39794
Match:	1f89A
Description:	hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.64442398754697	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.35962310800332	bayes_pls_golite062009
N-carbamoylputrescine amidase activity	0.749539597459006	bayes_pls_golite062009
hydrolase activity	0.06604196264626	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: